BAC Information

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BAC

Clone NameMSMg01-178E12
ChromosomeX (Build37)
Map Location 142,873,145 - 142,873,646
singlet/doubletsinglet
Overlap genenone
Upstream geneAmot, EG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
Downstream geneEG666730, EG245663, Htr2c, Il13ra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178E12.T7 (MSMg01no178_e12.b1)MSMg01-178E12.TJ (MSMg01no178_e12.g1)
ACCAG372415AG372416
length722802
length of high quality
(start - end)
506 (46 - 551)162 (77 - 238)
definitionCHROMAT_FILE: MSMg01no178_e12.b1 PHD_FILE: MSMg01no178_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:02 2005CHROMAT_FILE: MSMg01no178_e12.g1 PHD_FILE: MSMg01no178_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAAAATTTCTAGGCAAATGGATAGAACTTGAAAATATCATCCTG
AGAGAGAGGTAGCCCAATCAGAAACACACACACAGACACACAAGATATGC
ATTCACTGATAAGTGGATATTAGCCCCAAATTTTGGAATACCCAATAATC
AAAGAAGTGGCTATGAAGAAATAGAAGATTGTTGCTGTTTTGACTTTCAA
TATAAATTACATTTTTGGAATATTATTTTTGGTAAGTAGAAATATTGAGT
ACCCTGTAAATCCTGAGGAATGCTTAGCCTCTGTACACAAAAGAAAACCT
AAATAAATCATAAAATCTATACTAATTTTCTAAGGCATAAACCATTGACA
GTGACCTTCAGGCTTGCCGACATGATAGAATTGCTATTTCACGCTAATTT
ATTATTAATTCACACAATTATGTGCGACACTAACACAAAAGTTAGATTTT
GATACCAAATTCTAATGGGACAACTTGGATAATATAAATTGTAATACCAC
CTTGATCCTGAAAGTTTCAAAGTAGATATTCTATTCCTCACACAACAGTT
TACATATAATCAACTGCCTATTAACGCTCATATGCCCGGCTAGATGAAAC
ATAATTAATCATACCTTTGATACCTGTCTGTTTAGAGAATTTTGACTGTA
CTTTTAAACTGTTGATGACCAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTTTGTACTGCATTT
TTAATTGAATTATTTGGTTTTTTGGAGGTCAGCTTCATAAGTTCTTTATA
TATTTTGGATATAAACCCACTATTGGATGTGGGGTTGTTGAAGATTTTTT
CCTAATCTGTGGGTTGCTGATTTGTCCTACAGAATCTTTTCAGTTTCATG
AGCTCCCACCTATCAATTGTTGATCTTACAGCCTGATCCTTGGAACCCTT
AACTCATTGGCGATTTCTTTTTTAGCATAGGTTTTTCCTTGTCACGCCCC
ACACACCTTTTTTTCCCCCCCCCCCCCCCCTAAACAAACGGTCTTTTTTA
AAATTATTTTTTTTCCCCCCCCCAACCAAACACTTTTCTCTTAACTTTTT
CTCCATCGATCCACCCCTATCTCCCCCCCCCCTCTATTCATCCACTTTCC
CCCCTTCACCCCTTCCCAACACTCTACTCTTTTGGTGCTCTACTTTCTTT
ATTTTTATCTCAGCTTTTTTTTTTCTTAAAGCCCCACATTCCACCACTTC
CCCCTTTCCCTCTCCCCCTTTATTTTTTTTTCCTCCTCCGCCCCTTTTTT
CTCTTTTACGCTCCTTTTCCTTTTTACTTACCTTTCTACCCGCCACCCTC
CCCCTTCTTATCCGTTCTTCTACTAATACACACCTTATCCGCCCGTTTAT
CCAAATACACCGATTACCCCCTATCGTTTCTACTACTCCCTCCTTATTTC
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_e12.b1 MSMg01no178_e12.b1 CHROMAT_FILE:
MSMg01no178_e12.b1 PHD_FILE: MSMg01no178_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:02 2005
         (506 letters)



>mm_chrX_142872795_142873700
          Length = 906

 Score =  924 bits (478), Expect = 0.0
 Identities = 496/502 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataaaatttctaggcaaatggatagaacttgaaaatatcatcctgagagagagg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gaattcataaaatttgtaggcaaatggatagaacttgaaaatatcatcctgagagagagg 793

                                                                       
Query: 65  tagcccaatcagaaacacacacacagacacacaagatatgcattcactgataagtggata 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tagcccaatcagacacacacacacagacacacaagatatgcattcactgataagtggata 733

                                                                       
Query: 125 ttagccccaaattttggaatacccaataatcaaagaagtggctatgaagaaatagaagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ttagccccaaattttggaatacccaataatcaaagaagtggctatgaagaaatagaagat 673

                                                                       
Query: 185 tgttgctgttttgactttcaatataaattacatttttggaatattatttttggtaagtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgttgctgttttgactttcaatataaattacatttttggaatattatttttggtaagtag 613

                                                                       
Query: 245 aaatattgagtaccctgtaaatcctgaggaatgcttagcctctgtacacaaaagaaaacc 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaatattgagtacccggtaaatcctgaggaatgcttagcctctgtacacaaaagaaaacc 553

                                                                       
Query: 305 taaataaatcataaaatctatactaattttctaaggcataaaccattgacagtgaccttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 taaataaatcataaaatctatactaattttctaaggcataaaccattgacagtgaccttc 493

                                                                       
Query: 365 aggcttgccgacatgatagaattgctatttcacgctaatttattattaattcacacaatt 424
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agggttgctgacatgatagaattgctatttcacgctaatttattattaattcacacaatt 433

                                                                       
Query: 425 atgtgcgacactaacacaaaagttagattttgataccaaattctaatgggacaacttgga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atgtgcgacactaacacaaaagttagattttgataccaaattctaatgggacaacttgga 373

                                 
Query: 485 taatataaattgtaataccacc 506
            |||||||||||||||||||||
Sbjct: 372 aaatataaattgtaataccacc 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)