BAC Information

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BAC

Clone NameMSMg01-178H23
ChromosomeX (Build37)
Map Location 53,387,188 - 53,387,895
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263
Downstream gene3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178H23.T7 (MSMg01no178_h23.b1)MSMg01-178H23.TJ (MSMg01no178_h23.g1)
ACCAG372564AG372565
length751751
length of high quality
(start - end)		612 (46 - 657)671 (77 - 747)
definitionCHROMAT_FILE: MSMg01no178_h23.b1 PHD_FILE: MSMg01no178_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:19 2005CHROMAT_FILE: MSMg01no178_h23.g1 PHD_FILE: MSMg01no178_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAAAATGACCAGTGGTGAGGGTAGCAGCAAAGTTCTTGAGTCT
CAAAGACAACAGATACCGTGGCTCAATATTCCAACTACAACAACTAGGTA
ACATTGGTTCTACACTTAGCATGCCGTTTCTAGAAAAAAAAATTAAAGAA
TTAAGCCATGTTTCCTCTGAACCTGACATGTTACTATCACAAATGAAAGA
AGGATCCATGATCACATGAATATGAAAGGGGCATGAAGCAGCAAAATTGT
TCAACTTATTGGCAGCTAGTCAGCATTAACACAAGAAGGGACAAAGACAA
TAAACAGCTTTGATGACCTGTCCAAATGACCACGTTCATTTACAAGTTTT
TTACCCATTCCATGCACACCCACTGATTGATTAACTCATTGATTAAAGCC
CTCAGGTTCCAATCACTTTTCAGAGAGCATATTGTACTACCTATGAACAT
TGTACTGTGGACCAAAGCCTTCATCAAAGACCCATGACTGACATTTCAAA
ACAATTTAACCACAGAATTCTTTATTTGAAACAAAGTGATAGGATCCATC
TATCTCTTCAAGGATATCTCCGTTTTGTTCAAAAAGAACAAAAATGCAAT
GCAAGTTCAGGATATTGATCACCTATCCATGCATCTTAAACCCATAGGTT
CTAGCCAGAAGGTAAGGTCAGAAGTCTAAACTTCACCTATACTACAACTA
A

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAAAAACTTGTAATATTTACT
TTAAACAATTCATACATTTACACCTCACAGCACTTCTTCATAACTGTACT
ACCATTGCTGAGATCCTTCTTCTTCCCAAATGGTCCTTCTATTATTTTTA
TAATGGTTCTCCTTTTCTTTGTGTGTATATCTGGGAACATCCATGCAGGT
GGTTGTATTGTACTAGTTGCTATGTTTTTGTGATCACAAGGTCTAAAGGA
CCACAATCTGGTCTTGAACTACTCATATAAGAGCATCTGACCCTGAATTA
CTCTTTTTCCTGAATCTACTTCTCCAGTCAAGGGATCACAAACACCACTT
TTGAAGTACTCTATTGAAACGCGAAAAAATTGAAAATATTACACCGTATC
TTCATCTGTTTCTACCTGAGGTGATATATTCTCATCTTTGTCAAATGCTG
GGCTCTGTACTATATGGGCAACAGAAAATGGAAACATAATATGCTATATT
AGTAAAAGGGAATAAAGTATTAATGATTTGAATTTCTCAGGAAATACTGC
CCAGGTGAATTTTTGAAACAGCTTTTAGAAATGACATAATTACGTACATG
AAATCCAGTATAGGCATAGATAAGAAGTAAGGTTTCCAAATTATAGGGCT
AGTGAATATTTTTACCAATATTATAGAANAAAAATCCCTAACTTAAAGAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_h23.g1 MSMg01no178_h23.g1 CHROMAT_FILE:
MSMg01no178_h23.g1 PHD_FILE: MSMg01no178_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:19 2005
         (671 letters)



>mm_chrX_53386840_53387915
          Length = 1076

 Score =  414 bits (214), Expect = e-119
 Identities = 573/723 (79%), Gaps = 67/723 (9%)
 Strand = Plus / Minus

                                                                        
Query: 1    caaaaaaaacttgtaatatttactttaaacaattcatacatttacacctcacagca-ctt 59
            ||||| |||| |||| ||| |||||| ||||||||||||||||| ||| ||||| |  ||
Sbjct: 1056 caaaataaacctgtattatgtacttttaacaattcatacatttataccccacagtagttt 997

                                                                        
Query: 60   cttcataactgtactacca---ttgctgagatccttcttcttcccaaatggtccttctat 116
             |||||||||   || |||   ||||||||| ||||||| |||||| |||||||  || |
Sbjct: 996  attcataact---ctcccactcttgctgagacccttctttttcccagatggtccccctct 940

                                                                        
Query: 117  tatttttataatggttctccttttctttgtgtgtatatctgggaacatc-catgcaggtg 175
            || |||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 939  ta-ttttatgatgtttctccttttctttgtgtgtatatctgggaagatctcatgcaggtg 881

                                                                        
Query: 176  gttgtattgtactagttgctatgtttttgtgatcacaaggtctaaagg--accacaatct 233
            ||  ||||||  |||||||||||| ||||||||||||||||||  |||  ||  ||| ||
Sbjct: 880  gtcctattgttttagttgctatgtgtttgtgatcacaaggtctcgaggtcac--caagct 823

                                                                        
Query: 234  ggtcttgaactactcatataagagcatctg-----accctgaattactctttttcctgaa 288
            || |||||||||   |||| | ||| | ||     ||| |||||| ||  | | ||||||
Sbjct: 822  gggcttgaacta--aatat-atagc-tgtgtctttaccttgaattgctgatctccctgaa 767

                                                                        
Query: 289  tctacttctccagtcaagggatcacaaacaccacttttgaagtactctattgaa---acg 345
            |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||     |
Sbjct: 766  tctacttctccagtgaagggatcacaaacactacttttgaagtacactattgaagtg--g 709

                                                                        
Query: 346  cgaaaaaattgaaaatatta-caccgtatcttcatctgtttctacctgaggtgatatatt 404
            | ||||||  ||||||| || | || |||||||||||| |||||  ||||| || |||||
Sbjct: 708  caaaaaaaaagaaaata-tagccccatatcttcatctgcttctatgtgaggcgacatatt 650

                                                                        
Query: 405  ctcatctttgtcaaatgctgggctctgtactatatgggcaacagaaaatggaaacata-a 463
            |||||||||||||||||||||||||| || | ||| | ||| |||||||||||||||| |
Sbjct: 649  ctcatctttgtcaaatgctgggctctttattgtattgacaatagaaaatggaaacatata 590

                                                                        
Query: 464  ---tatgctatattagtaaaagggaataaagtattaatgatttgaatttctcaggaaata 520
               |||||||||||||||| ||  |||||||||||| ||||||| ||||| | ||||| |
Sbjct: 589  aagtatgctatattagtaatagttaataaagtattattgatttgcatttccctggaaaaa 530

                                                                        
Query: 521  ctgcccaggtgaatttttgaaacagcttttagaaatgacataattacgtac--atgaaat 578
            ||||||| |||| ||| ||||||||||||||||||||| ||||||||  ||  | |||||
Sbjct: 529  ctgcccatgtgagtttctgaaacagcttttagaaatgaaataattac--acccaggaaat 472

                                                                        
Query: 579  ccag----------------------ta-------taggcatagataagaagtaaggttt 609
            ||||                      ||       |||| ||||||  |||||||| |||
Sbjct: 471  ccaggacacaaggagaagacaaaacttaaggataataggtatagatgggaagtaagattt 412

                                                                        
Query: 610  ccaaattatagggctagtgaatatttttaccaatattatagaanaaaaat-ccctaactt 668
            |||||||| ||||| ||||||||| || | ||| ||||||||| |||| | ||||||| |
Sbjct: 411  ccaaattaaagggccagtgaatatcttcaacaaaattatagaagaaaacttccctaacct 352

               
Query: 669  aaa 671
            |||
Sbjct: 351  aaa 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1076
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1066
Effective search space:   704626
Effective search space used:   704626
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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