BAC Information

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BAC

Clone NameMSMg01-180F20
ChromosomeX (Build37)
Map Location 12,404,774 - 12,405,082
singlet/doubletsinglet
Overlap genenone
Upstream geneRpl23a-ps, LOC100043945, Bcor, 2900008C10Rik, LOC385323, LOC100043946, LOC628441, Atp6ap2, LOC668986, EG245347, 1810030O07Rik, Crsp2
Downstream geneLOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180F20.T7 (MSMg01no180_f20.b1)MSMg01-180F20.TJ (MSMg01no180_f20.g1)
ACCAG373864AG373865
length756744
length of high quality
(start - end)
316 (34 - 349)289 (117 - 405)
definitionCHROMAT_FILE: MSMg01no180_f20.b1 PHD_FILE: MSMg01no180_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:35 2005CHROMAT_FILE: MSMg01no180_f20.g1 PHD_FILE: MSMg01no180_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATATCT
GTATCCACAGCAGGAAGAAGAGACACTGAGCTTGGCATAACTTTTGAAAC
CTCATAGCCCCCCCCTAACAAGGCCATACCTCCTAATTCACTCAAATCGT
GCCACTCCTTAATGACTAAGCATTAAAATCTATGTACCCTTGGGGGCCAT
TCTCATTCAGACCACCACAATATTGTATAACCGATGAAAAAAGAAGCAGA
AAATTAATCATTTATTTCGACAGAGAAAAGCCACCAGCTAGGGACATGCT
GCTGCTTCCGTCTCTTCAAGGCAAATCCAAGCCATCTTGCCTGGTGTTTT
TAAGCTCACCCGACCAAGGTCCTGGAGTGCTGAAGCTTCAGTTATCTTCA
ACCCCCCCAGCATTCTCTTGGTACAGCGTTACAGGGAGCCCACCATGGTT
GGCCACGTAGACACAGTTTTGTTTTTGTTTTTTTAAGATTAATTATTTTA
TGTATATGAGTATATATACTGTAGCTGTACAGATGGTTGCGAGTCTTCAT
GTGTGTGTTGTACAATAGCTTTTAGTAATCTCTGAATATCCAGACTCATC
ACTTTTTTGCCATTCCCTATTTTATAACTCCCCCTTAATATAATATAATT
TTATATTTTATACACCCCATTTTATATTTTTTTTTTTTTGCCATCTATTT
TTTTCTCCATAATTTTACCCCATTTTTATACATATATTTTAAATTAACTA
CCCTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGAGAAGCACCTG
AAAAAATATGTCCCCGCATCCTTAATCATCAGGGAACTGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACCACTC
AAATCTTTTTTAAGTGCAATGCAGGCACTGGAGAGCTCAGTAGTTAAGAG
CACTGGCTGCTCTTCCAGAGGACCCATGCTTGTTTCCCAGCAACCACAGG
ATGGCTCACTCTAGTTCCAGAAGATCTGACACCTTCTGCACTCCTGTGAT
ATTGCACCCACAGGAAGCACAAGCATGCATGAAGGAAAAACAACCATACA
GATAAAATAAAGTTAAATAAAATCTCAAAAAAAGTGCAGTACAGCTAGAT
ATGGTGGCACACACCTGTTATCACAGCACACAGGAGACTGAGGCAGGAGG
ATCAGGGTTCAAGGCCATCCTGGGCTAAATAATGAAACTGTCTCAAAAAA
TAAATAAAGCCCAAAAGAAACATACCCAGATGCCCAAATAATGTCCCATG
AACATGATCTGTGAATCAGGATAAGTACAAGGCTATTTCCCAACCTGTTA
ATAATTATTTCTTTACTTACTTGTTACGAATTTCATATATACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_f20.b1 MSMg01no180_f20.b1 CHROMAT_FILE:
MSMg01no180_f20.b1 PHD_FILE: MSMg01no180_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:35 2005
         (316 letters)



>mm_chrX_12404570_12405285
          Length = 716

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatatctgtatccacagcaggaagaagagacactgagcttggcataacttttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatatctgtatccacagcaggaagaagagacactgagcttggcataacttttga 264

                                                                       
Query: 65  aacctcatagcccccccctaacaaggccatacctcctaattcactcaaatcgtgccactc 124
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacctcaaagcccacccctaacaaggccatacctcctaattcactcaaatcgtgccactc 324

                                                                       
Query: 125 cttaatgactaagcattaaaatctatgtacccttgggggccattctcattcagaccacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttaatgactaagcattaaaatctatgtacccttgggggccattctcattcagaccacca 384

                                                                       
Query: 185 caatattgtataaccgatgaaaaaagaagcagaaaattaatcatttatttcgacagagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatattgtataaccgatgaaaaaagaagcagaaaattaatcatttatttcgacagagaa 444

                                                                       
Query: 245 aagccaccagctagggacatgctgctgcttccgtctcttcaaggcaaatccaagccatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagccaccagctagggacatgctgctgcttccgtctcttcaaggcaaatccaagccatct 504

                    
Query: 305 tgcctggtg 313
           |||||||||
Sbjct: 505 tgcctggtg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)