XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGAGGAATACAGAAAGGCTGAGAAGCACCTGAAAAAATGTTCAACATC
CTTAATCATCAGGGCAATGCAAATCAAAGTAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGGTCAAAAATTCAGGTGACAGCAGATGCTGG
CGAGGATGTGGAGAAAGAGGAACACCCCTCCACTGTTGGTGGGATTGCAA
GCTTGTACAACCACTCTGTATATCACTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACTGGAGGATCCCGCAATCCCTCTCCTGGGCATATATCCA
GAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAA
CAGAGGAATGGATACAGAAAATGTGGTTCCTTTACACAATGGAGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGAAATGGATGGAC
CTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACA
CAATATGTTCTCACTGATAAGTGGATATTAGCCTAGAAACTTAGGATCCC
CAAGATATAAGATAAAATTTGCTAAATGCATGAAACTCAAGAAGAACGAA
GACCAAAGTGTGGACACTTTGCCCCTTCTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAGAAGGTGGACTCCAGAAAATCAAATAGTGTT
TTGCAAACAAAAAAATTTACAAGTGCCAGAATATAGAACAAATATGAAAA
CTTATGTTAAAAAAAGTGGAACAATTGGAATATCTTTGTAAGGGTCCAGT
CATTTATAGTACTATCAACAAAAGAAGAGGAACTAATTAAATCTCCAGAA
TAGACGCATGTTGCCTGTGCCCTGATCCTACATCCCTTTGGGTTTGGGGG
TGCTTGTGGCAGAGTCAAGACCACAAAGTCTGGGATCAGGTGAGAAATGC
TGCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGCAAACCCCTT
AGCATTTATATAGAGGTGGCCTTGCATTCCTACTATAGACAGGGATATTA
GAATATAGAACAAAATAAATGACAAGTCCACATTAAATAAAAAAATATAT
AAACTATACATAAGAAGATTCTAAAATCACCATTAAAATTTTAGAAAACA
GTGATAAATAATTGGGAATCATATATAACAGTTATTTTATCAAAACAAAA
TATCTTTATCTATGGAAAGCAGAGAACTGAACAAACATCTTTGTAACAGA
AATGATTTTCATTGCACATTTGGATTATTAAACCAAAATATTAATTAAAT
GAAAGACAAAGTCAAAGATATATCAGAACTGG

Query= MSMg01no180_l04.g1 MSMg01no180_l04.g1 CHROMAT_FILE:
MSMg01no180_l04.g1 PHD_FILE: MSMg01no180_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:00 2005
         (571 letters)



>mm_chrX_115923108_115924078
          Length = 971

 Score =  679 bits (351), Expect = 0.0
 Identities = 562/733 (76%), Gaps = 164/733 (22%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaggtggactccagaaaatcaaatagtgttttgcaaacaaaaaaattt-acaagtgc 59
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 41  aagaaggtggactccagaaaatcaaatagtgttttgcaaacaaaaaatttttacaagtgc 100

                                                                       
Query: 60  cagaatatagaacaaatatgaaaacttatgttaaaaaaagtggaacaattggaatatctt 119
           ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 101 cagcatatagaacaaatatgaaaacttatgttaaaaa--gtggaacaattggaatatctt 158

                                                                       
Query: 120 tgtaagggtccagtcatttatagtactatcaacaaaagaagaggaactaattaaatctcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tgtaagggtccagtcatttatagtactatcaacaaaagaagaggaactaattaaatctcc 218

                                                                       
Query: 180 agaatagacgcatgttgcctgtgccctgatcctacatccctttgggtttgggggtgcttg 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 agagtagacgcatgttgcctgtgccctgatcctacatccctttgggtttgggggtgcttg 278

                                                                       
Query: 240 tggcagagtcaagaccacaaagtctgggatcaggtgagaaatgctgca------tt---- 289
           ||||||||||||||||||||||||||||||||||||||||||||||||      ||    
Sbjct: 279 tggcagagtcaagaccacaaagtctgggatcaggtgagaaatgctgcagcaagcttatct 338

                                                                       
Query: 290 --------------------ttttt--------------------tt------------- 296
                               |||||                    ||             
Sbjct: 339 gagcactgctccaagctccgtttttactctccacccacatcctcattggtcccaagaaag 398

                                                                       
Query: 297 --tt----------------tt-----tt--------tt-ttt---tt------------ 309
             ||                ||     ||        || |||   ||            
Sbjct: 399 cattgctcatgaacagcaagttcctgattggctggcattgtttgcattagcaatccttga 458

                                                                       
Query: 310 -----------------------------------------tttttttggagctgcaaac 328
                                                    |||||||| ||||| ||||
Sbjct: 459 tctctcaggcagtactcaattaggtcctcttgtaggagatgtttttttgtagctgtaaac 518

                                                                       
Query: 329 cccttagcatttatatagaggtggccttgcattcctactatagacagggatattagaata 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cccttagcatttatatagaggtggccttgcattcctactatagacagggatattagaata 578

                                                                       
Query: 389 tagaacaaaataaatgacaagtccacattaaataaaaaaa----------tatataaact 438
           ||||||||||||||||||||||||||||||||||||||||          ||||||||||
Sbjct: 579 tagaacaaaataaatgacaagtccacattaaataaaaaaaaataaaaaaatatataaact 638

                                                                       
Query: 439 atacataagaagattctaaaatcaccattaaaattttagaaaacagtgataaataattgg 498
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 639 atacataagaagattctaaaatcaccattaaaattctagaaaccagtgataaataattgg 698

                                                                       
Query: 499 gaatcatatataacagttattttatcaaaacaaaatatctttatctatggaaagcagaga 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaatcatatataacagttattttatcaaaacaaaatatctttatctatggaaagcagaga 758

                        
Query: 559 actgaacaaacat 571
           |||||||||||||
Sbjct: 759 actgaacaaacat 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)