BAC Information

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BAC

Clone NameMSMg01-181N12
ChromosomeX (Build37)
Map Location 121,325,148 - 121,325,524
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181N12.T7 (MSMg01no181_n12.b1)MSMg01-181N12.TJ (MSMg01no181_n12.g1)
ACCAG374900AG374901
length773781
length of high quality
(start - end)
454 (76 - 529)250 (73 - 322)
definitionCHROMAT_FILE: MSMg01no181_n12.b1 PHD_FILE: MSMg01no181_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:24 2005CHROMAT_FILE: MSMg01no181_n12.g1 PHD_FILE: MSMg01no181_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGA
AACTCTGTATCGAAAAAAAGAACATCCAAAAACAAGTGAACAAAAAACTT
AACACAAACCAAAAAAAACAAAAAAACAAAAAAAATCCAAAAAAAAACCA
AAAACAAACAAACAAACAAAAAAACCACCCCCCCAAAATACTAAAAAACA
AAAATCATAAAAAAAAACTTTAAAGCCTAAAAAAAACCCAAACCCTGAAG
AACCCTAATATCCTAAAAAAAAAAGAAAAAAAAAAGAAAAAACAGAAAAA
AACACTACAAATACACTAAAATACTGAAAACCAAAAACACCTCTAAAACA
CTCTTCTTAATACCCTACAAAACTCTTAAGAAGAACACTAAAATTCTAAA
AAATTAAGAATATAAAAGAATGTAAAAATGACCCCAAAAGTGGGCTTATT
CTTGTTTTTTTGTTTTTTTTTGAGTCTTTGGAGACTGGATTTCCTCGTTT
TGTTTCTGTTCTCCCATTCTTGTTGTTCACCTTTTTTGACCAACCAACTC
CTAAACCCATCTATTTTTTTTTCCCCCACCCCCCTCCCCCCCCCATTTTT
TTTTTCCCCCCCCCCCCTCCCCCCTCCCCCATCCCTTTTTCCTTTTTTTT
ATTACACACACCCCCCCCCCGCCACTTAATAATCAATAAAATTATATTAT
ACTTACTACCTTCAATTTATAAT
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTTTTTCCGCGATGTGATGTTTTTTCAAAAGCATTCATCTTAG
AATAATAGTAACTTATAAAGTCCTCTTCAGAATTTATACAATAATAATAA
ATATCAAGCAAAGCCTTTAGTCTCACTCTTTGCTGTTCTCTTATAAGCCA
CCTCCCAAATTAATTGTCTACATTTATTTTGGTTTATAAAATGTTTTGAA
AAATTTAAGGTGTTCTGAAAACCATAGTATAGCGTAAAAATATCAAATAA
ACAATCCTACTAATACAGAGGTTGATATAGGGGAAGCATGTTTTCAAGAC
CATTATGTGGTATACAGCAATACAGTGTTATGTACAAAAAAGAAAAAAGA
ATATATGGATTATTACCCCCACCGGACTTATTAATCCTATTTATCAAATT
AGGAACAACATATTGAAATACGGACAATTTCCAATTCCTCATATTTTTGA
ATTTCATTCCCTTACGCTATGATGTCATCATTAATTTTCATATTAAAAAA
TACTAACTCACTATATTTTCTCTTCCCTCTATTTATTTATTTTAACCACT
TACTCCTTCTTTTCATATCAATTTTATTTAACCATTTTTTTTTTTACTAA
TGTTTTCTTACTTCCTTTTATTTTTATTATCATCCTATACTACTTTATTT
TTTCTCCTATTATACACCTCCCCCTCTTTTTATTATATTTTTTTTTCTTC
CTCCTATTTCTTCTTTTTTTCTATTTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_n12.b1 MSMg01no181_n12.b1 CHROMAT_FILE:
MSMg01no181_n12.b1 PHD_FILE: MSMg01no181_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:24 2005
         (454 letters)



>mm_chrX_121324671_121325525
          Length = 855

 Score =  437 bits (226), Expect = e-127
 Identities = 337/384 (87%), Gaps = 29/384 (7%)
 Strand = Plus / Minus

                                                                       
Query: 89  aaaaacaaaaaaacaaaaaa----aatccaaa-aaaaaaccaa-aaacaaacaaa----- 137
           ||||||||  ||||||||||    || ||||| ||||||| || |||||||||||     
Sbjct: 854 aaaaacaagcaaacaaaaaaacctaacccaaacaaaaaacaaacaaacaaacaaaaaaaa 795

                                                                       
Query: 138 ---caaacaaaaaaacc-accccccc---aaaatact--aaaaaacaaaaatcataaaaa 188
              ||||| |||||||| ||||||||   ||||||||  |||||| |||||||||  | |
Sbjct: 794 aaccaaaccaaaaaaccaacccccccaaaaaaatactaaaaaaaaaaaaaatcat--aga 737

                                                                       
Query: 189 aaaactttaaagcctaaaaaaaacccaaaccctgaagaaccctaatatcctaaaaaaaaa 248
            |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 736 caaactttaaagcct-aaaaaaacccaaaccctgaaaaaccctaatatcctaaaaaaaaa 678

                                                                       
Query: 249 agaaaaaaaaaagaaaaaacagaaaaaaacactacaaatacactaaaatactgaaaacca 308
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 --aaaaaaaaaa-aaaaaacagaaaaaaacactacaaatacactaaaatactgaaaacca 621

                                                                       
Query: 309 aaaacacctctaaaacactcttcttaataccctacaaaactcttaagaagaacactaaaa 368
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 620 aaaacacctctaaaacactcttcttaaaatcctacaaaactcttaagaagaacactaaaa 561

                                                                       
Query: 369 ttctaaaaaattaagaatataaaagaatgtaaaaatgaccccaaaagtgggcttattctt 428
           |||||||||||||| |||||| ||||| |||||| |||||| |||| |||||||||| ||
Sbjct: 560 ttctaaaaaattaaaaatatacaagaacgtaaaagtgacccaaaaactgggcttattttt 501

                                   
Query: 429 gtttttttgtt-t-ttttttgagt 450
           |||||||| || | ||||||||||
Sbjct: 500 gttttttt-ttgtgttttttgagt 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 855
Length adjustment: 10
Effective length of query: 444
Effective length of database: 845
Effective search space:   375180
Effective search space used:   375180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)