BAC Information

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BAC

Clone NameMSMg01-183I20
ChromosomeX (Build37)
Map Location 159,457,849 - 159,458,128
singlet/doubletsinglet
Overlap geneCtps2
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183I20.T7 (MSMg01no183_i20.b1)MSMg01-183I20.TJ (MSMg01no183_i20.g1)
ACCAG376105AG376106
length874725
length of high quality
(start - end)
218 (42 - 259)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no183_i20.b1 PHD_FILE: MSMg01no183_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:36 2005CHROMAT_FILE: MSMg01no183_i20.g1 PHD_FILE: MSMg01no183_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATCTTTTCACACTTTTATCATGAATGGGTGTTGGATTTTGTCAAAT
GCTTTCTCCGCATCTAATGACCTCGATCATGTGGTTTTTGTCTTTGAATT
TGTTTATATAATGGATTATGTTGATGGATTTCTGTATATTAAACTATCCC
TGCATCCCTGGAATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGAT
GTGTTCTTGCATCCCCCTACCCACAATTTTATTGAGTATTTTTGCATCCA
TATTCATAATGAAAATTGTTTTTTTTTTCTCCATCTTTGCCGCCCCACTC
CCCCCCCCTTTTTTTTTTTTCCCCCCCCCCCCCCCCTCTATATTATTTTT
GTTATAGTTTTATTTTTTTACCCCCCCCCCCTTTAAAAAATATATATACA
TTTCTTTTCTATTTCCACTTTCCCCTCACATCCCCCTTTCTTCACACTCT
TCTCCCCCCCCCCATCTTTCAACTACTCTCCTTAATATTTCTCTTCCTCT
TACTCCCATCCTTAATCTCTAACTTTTCACCCACTCCCCATCTCCTCTTA
CCTCCCTCCTCTTCTCCACCGCTTTTTATCTCCCACCCAACTTCCCTCCC
ATCTCCCATTTCCCCCCCATATATCTACCCTCTATCTACCACCACCCCCA
TTTCATACTACTCCCCACTCCCTCCTAATTCTCCCCCATTACCTATCTCA
CCCCTTCTCCACTCTTCTTATTATTCTCTCTTCCTCCCCCTTCCCTCCAC
TATTTTCTCTATCCACCTCCATCCTCCCTACGCCTTCTATACACTCCTTC
TTATACCTCCCCCTTCCCATTCCN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAACCCAAGTCTTTGTTACTCAGTGC
CTGTGAGCTCATCTTTCTCTGCACTAGTTTCTTTATAAAAAGTTTCTGTG
GAGCCAGGCAGGAAATTAGTTCTCTGTGAGCTCAAGGCCACCCAGGGATA
CACAGGGATACACAGGGATACATCGGGATACATCGGGATACATCTTGTCT
CAAAAAGGGGGACTGGAAGCTATGGATTAATGAGGCCTGGACTATACCCT
AATACACACCACATACAGTCCACCCACACAAGATAAAATTTCTTAGTTTA
CATGGTAGTAATTTTTTTAAGTCCCCCCTCGCTAAATCATTTAGCATAGT
GCTTGGTGTACGATAGGAACTTAAATGTTGATGATGATGATGATGACAAT
GGTGATGATATTAATGTTATTAATTTTAACCTTAGTTCCAGTCACCTTCA
TCTTTTATCTACTGTGAAGCCTCCTGCTTGGACTTGCCTCTAGTTTTTCT
CCTCCTAATTCTTCTAATCCATCTTCTGCCATTAGGATAGTCTTTCCACA
TGACTTTGGAGCTCANAACCTTCAGTGGCTTACCTTGGTTTATGGGATAA
AATGCACATAAATCCATACAGAACACCTTGAAGTCTCAAAAACTCTCTAG
GGGTGGTGTTTTTTGTTCCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_i20.g1 MSMg01no183_i20.g1 CHROMAT_FILE:
MSMg01no183_i20.g1 PHD_FILE: MSMg01no183_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:36 2005
         (287 letters)



>mm_chrX_159457639_159458328
          Length = 690

 Score =  472 bits (244), Expect = e-137
 Identities = 273/290 (94%), Gaps = 13/290 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacccaagtctttgttactcagtgcctgtgagctcatctttctctgcactagtttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aaacccaagtctttgttactcagtgcctgtgagctcatctttctctgcactagtttcttt 270

                                                                       
Query: 61  ataaaaagtttctgtggagccaggcaggaaattagttctctgtgagctcaaggccaccca 120
           |||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct: 271 ataaaaagtttctgtggagccaggcaggtagttagttctctgtgagttcaaggccaccca 330

                                                                       
Query: 121 gggatacacagggatacacagggatacatcgggatacatcgggatacatcttgtctcaaa 180
           ||||||||||||||||||          ||| ||||||||||||||||||||||||||||
Sbjct: 331 gggatacacagggataca----------tcgtgatacatcgggatacatcttgtctcaaa 380

                                                                       
Query: 181 aagggggactggaagctatggattaatgaggcctggactataccctaata---cacacca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 381 aagggggactggaagctatggattaatgaggcctggactataccctaataatacacacca 440

                                                             
Query: 238 catacagtccacccacacaagataaaatttcttagtttacatggtagtaa 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catacagtccacccacacaagataaaatttcttagtttacatggtagtaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 690
Length adjustment: 9
Effective length of query: 278
Effective length of database: 681
Effective search space:   189318
Effective search space used:   189318
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)