BAC Information

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BAC

Clone NameMSMg01-184D09
ChromosomeX (Build37)
Map Location 89,336,234 - 89,448,200
singlet/doubletdoublet
Overlap geneEG236893, Mageb18, EG436259
Upstream geneLOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892
Downstream geneEG668061, EG546347, LOC629568, LOC100042663, Rp23-438h3.2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184D09.T7 (MSMg01no184_d09.b1)MSMg01-184D09.TJ (MSMg01no184_d09.g1)
ACCAG376566AG376567
length731721
length of high quality
(start - end)		313 (58 - 370)645 (77 - 721)
definitionCHROMAT_FILE: MSMg01no184_d09.b1 PHD_FILE: MSMg01no184_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:29 2005CHROMAT_FILE: MSMg01no184_d09.g1 PHD_FILE: MSMg01no184_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:29 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(89,447,892 - 89,448,200)(89,336,234 - 89,336,878)
sequence
CCCCAAAAGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTTAAGTGCTCTCTCTAGAATACTAAGGGAAAT
TTATATGAAGCTATCCAATTTGATAGTGAGTTCTATTTTTATTTATTTTA
TTTTTTTCAAGATACATAAAAAGACTTTATTTGCAGGGGAGCAGGAATTT
AATCAAACAAGAAAATCCCATGCCATCATCCAACTCCTCGGACACCTCCT
TCTTCTCATCTTTCTTCTCCTCTACTGCAGCAACCCATACACACACCTCC
ACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCTCTGTAT
GGGGATATATAAAGTTTGCATGTCTTAAGGCCCCCTCTCTCCCAGTGATG
GCCCACTAGACCGTCTTTTGATAAACACGCAGCTAGAGACAAGAGCTCCG
GGGTACTGGCTAGTTCATAATATTGTTCCACCTGTAGGATTGCAAATCCC
TTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGAT
CCATCCAATAGCTGACTGTGAGCATCCACTTATGTATTTGCTAGGCCTTG
GCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTT
GCTAGTGTATGCAATGGCGTCACCGTTTGGAGGCTGATTATGTCATGCAT
CCCTGGATATGGTAGGCTCTAGATGGACCAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGACTTCTTCATCAACATGT
CTGCAAGCATGCCACCATACTTCCTCACCATGATGATAATGGACTAAATC
TCTGAAACTGTAAGACAGACCCAGTTAAATGTTTTTCTTTATTAGAGTTG
CTGTGGTTATGATGTCTTTTCACAGCAATAGAAACCCTCACTGAGACAGT
AACCCTCATAAGTTCCCAAGAAAATCTCACTGCATTAGGTTTCCACATTG
TCCATATGTCCCCCAATTCTAGGTACTTCTCCCCATACTCTCTCCTTCTG
ACCCTCCTTCCTTCACCTGATCCTTCCTGTTTCTCTCCCCAGTTGCCCCC
AGTCCACCCATAAAATCTACTCTATTTTCCTTTCCCAGGGAGATTCATAC
ATCCCTCCAGAGTCCTTTCGTTACTTAGCATCTCTGAGTGAGGCAAGAGA
CCCAGAAAGACAGATATTCATAAGTAGATATTAGCTGTTAAGTAAAATTT
AATAATGCTATAATCCATAGGTCCATTATAATTTTTCTTGTATCTCTTCT
TTGCAATATTCATGTTGCTCAGTACTTCAAAATAAGACATATTTGGAGAT
GAGATTTTCAATTTAATTATTGGAATAAGCACTTATACATTGCGACTGGG
ATGCTCTTATTTGAATGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_d09.b1 MSMg01no184_d09.b1 CHROMAT_FILE:
MSMg01no184_d09.b1 PHD_FILE: MSMg01no184_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:29 2005
         (313 letters)



>mm_chrX_89447680_89448392
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttaagtgctctctctagaatactaagggaaatttatatgaagctatccaattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattctttaagtgctctctctagaatactaagggaaatttatatgaagctatccaattt 462

                                                                       
Query: 65  gatagtgagttctatttttatttattttatttttttcaagatacataaaaagactttatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gatagtgagttctatttttatttattttatttttttcaagatacataaaaagactttatt 402

                                                                       
Query: 125 tgcaggggagcaggaatttaatcaaacaagaaaatcccatgccatcatccaactcctcgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgcaggggagcaggaatttaatcaaacaagaaaatcccatgccatcatccaactcctcgg 342

                                                                       
Query: 185 acacctccttcttctcatctttcttctcctctactgcagcaacccatacacacacctcca 244
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 341 acacctccttcttctcatctttcttctcctctactgcagcagcccatacacacaccccca 282

                                                                       
Query: 245 ctcccctacccacccactcccactttttggccctggcgttcctctgtatggggatatata 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 281 ctcccctacccacccactcccactttttggccctggcgttcctctgtacggggatatata 222

                    
Query: 305 aagtttgca 313
           |||||||||
Sbjct: 221 aagtttgca 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no184_d09.g1 MSMg01no184_d09.g1 CHROMAT_FILE:
MSMg01no184_d09.g1 PHD_FILE: MSMg01no184_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:29 2005
         (645 letters)



>mm_chrX_89336034_89337078
          Length = 1045

 Score = 1224 bits (633), Expect = 0.0
 Identities = 642/645 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtgacttcttcatcaacatgtctgcaagcatgccaccatacttcctcaccatgatga 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tcagtgacttcttcatcaacatgtctgcaagcatgccaccatgcttcctcaccatgatga 260

                                                                       
Query: 61  taatggactaaatctctgaaactgtaagacagacccagttaaatgtttttctttattaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatggactaaatctctgaaactgtaagacagacccagttaaatgtttttctttattaga 320

                                                                       
Query: 121 gttgctgtggttatgatgtcttttcacagcaatagaaaccctcactgagacagtaaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgctgtggttatgatgtcttttcacagcaatagaaaccctcactgagacagtaaccct 380

                                                                       
Query: 181 cataagttcccaagaaaatctcactgcattaggtttccacattgtccatatgtcccccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataagttcccaagaaaatctcactgcattaggtttccacattgtccatatgtcccccaa 440

                                                                       
Query: 241 ttctaggtacttctccccatactctctccttctgaccctccttccttcacctgatccttc 300
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ttccaggtacttctccccatactctctccttctgaccctccctccttcacctgatccttc 500

                                                                       
Query: 301 ctgtttctctccccagttgcccccagtccacccataaaatctactctattttcctttccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtttctctccccagttgcccccagtccacccataaaatctactctattttcctttccc 560

                                                                       
Query: 361 agggagattcatacatccctccagagtcctttcgttacttagcatctctgagtgaggcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggagattcatacatccctccagagtcctttcgttacttagcatctctgagtgaggcaa 620

                                                                       
Query: 421 gagacccagaaagacagatattcataagtagatattagctgttaagtaaaatttaataat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagacccagaaagacagatattcataagtagatattagctgttaagtaaaatttaataat 680

                                                                       
Query: 481 gctataatccataggtccattataatttttcttgtatctcttctttgcaatattcatgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctataatccataggtccattataatttttcttgtatctcttctttgcaatattcatgtt 740

                                                                       
Query: 541 gctcagtacttcaaaataagacatatttggagatgagattttcaatttaattattggaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctcagtacttcaaaataagacatatttggagatgagattttcaatttaattattggaat 800

                                                        
Query: 601 aagcacttatacattgcgactgggatgctcttatttgaatgtgtt 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagcacttatacattgcgactgggatgctcttatttgaatgtgtt 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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