BAC Information

Click to search

BAC

Clone NameMSMg01-186G10
ChromosomeX (Build37)
Map Location 58,409,124 - 58,409,339
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps, LOC627159
Downstream geneEG631990, LOC632000, LOC100039759, EG245440, LOC100039778, Ldoc1, LOC654353, EG627299, LOC666654, LOC385367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186G10.T7 (MSMg01no186_g10.b1)MSMg01-186G10.TJ (MSMg01no186_g10.g1)
ACCAG378097
length757763
length of high quality
(start - end)
---216 (77 - 292)
definitionCHROMAT_FILE: MSMg01no186_g10.b1 PHD_FILE: MSMg01no186_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:22 2005CHROMAT_FILE: MSMg01no186_g10.g1 PHD_FILE: MSMg01no186_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TATCAAC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAAATATTTTATAAATAAGAGA
TTCATCACAATGAATATGGCTTCTTAATGGGCTAAGAGGAGCTCTGTGTG
CTAGAAAAGATGTGGGCTCCATGGCCTGCCATTTGCTCCTTTACTGAGAA
GCAGTCATCATTGATCACTGTCACTTATGACATGACAGGCAGTTCACTAG
TTTTTGGTTTTGATTTGGTTTTATTTTCATTGTTATTGTTTGTGTTTTNT
TTTTNNTTNNNNTTTTTTTTTTTTNNTNNTTTTTTTTTNNNNTNNNNNNN
TTTTTTTTTTTTTTTCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTTTCCCCCCCAAAAAAAAAAAAAAATAGGGGGGGGGGGCGGG
GTTTTTTTTTATACTCCTTCATACTATCCTATATTGCTTTCCTTGCCATA
TTTCTATCCCTCACAACACCTTCCCTTTTTTCTTTTCTTACTCCCTCCTT
ACTAATACCGTGTTACTCCCATCCTGTTACCCATCTATCCGCCAAACTTC
ATCCACTAATCCTTCACTTCCTCAACTTATTCCTTCGCCCGTCCGCACTT
TCTCTGCCGTTTATCCTCCCTCCCCCCATCCACACTTATTAATTATCCAA
CACTCTCCCGTCTGACTTATTTCCTCCCTCCCTTTCTTATCTCCTTCTTC
ATACTCGGTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_g10.g1 MSMg01no186_g10.g1 CHROMAT_FILE:
MSMg01no186_g10.g1 PHD_FILE: MSMg01no186_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:23 2005
         (216 letters)



>mm_chrX_58408924_58409539
          Length = 616

 Score =  410 bits (212), Expect = e-119
 Identities = 215/216 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaatattttataaataagagattcatcacaatgaatatggcttcttaatgggctaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cataaatattttataaataagagattcatcacaatgaatatggcttcttaatgggctaag 357

                                                                       
Query: 61  aggagctctgtgtgctagaaaagatgtgggctccatggcctgccatttgctcctttactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aggagctctgtgtgctagaaaagatgtgggctccatggcctgccatttgctcctttactg 297

                                                                       
Query: 121 agaagcagtcatcattgatcactgtcacttatgacatgacaggcagttcactagtttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agaagcagtcatcattgatcactgtcacttatgacatgacaggcagttcactagtttttg 237

                                               
Query: 181 gttttgatttggttttattttcattgttattgtttg 216
           |||||||||||||||||||||||||| |||||||||
Sbjct: 236 gttttgatttggttttattttcattgctattgtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)