Query= MSMg01no187_d23.b1 MSMg01no187_d23.b1 CHROMAT_FILE:
MSMg01no187_d23.b1 PHD_FILE: MSMg01no187_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:30 2005
(320 letters)
>mm_chrX_97835095_97835814
Length = 720
Score = 582 bits (301), Expect = e-171
Identities = 313/317 (98%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtatgtagaccaggctggcatctcgtagggatccacctgcctctgtctcctga 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtatgtagaccaggctggcatctcatagggatccacctgcctctgtctcctga 264
Query: 65 gggccactgtgtctgacctcagacaaacttttaaatctatcttgaggacatacataggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggccactgtgtctgacctcagacaaacttttaaatctatcttgaggacatacataggga 324
Query: 125 tggaattgttgggttattggttaactccactttaactttcttttctataaaaaa-tatac 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 tggaattgttgggttattggttaactccactttaactttcttttctataaaaaaatatac 384
Query: 184 agagtgaattttagtatattcacaaggagttgtttaaccattcccaaaataaattctacg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 agagtgaattttagtatattcacaaggagttgtttaaccattcccaaaataaattctagg 444
Query: 244 atgtttttactcttccctgagcaaagctgatacccattagccgtcactccctgctcctgt 303
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgtttttactgttccctgagcaaagctgatacccattagccgtcactccctgctcctgt 504
Query: 304 cagtttgcttctgccct 320
|||||||||||||||||
Sbjct: 505 cagtttgcttctgccct 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_d23.g1 MSMg01no187_d23.g1 CHROMAT_FILE:
MSMg01no187_d23.g1 PHD_FILE: MSMg01no187_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:30 2005
(659 letters)
>mm_chrX_97856379_97857437
Length = 1059
Score = 719 bits (372), Expect = 0.0
Identities = 406/426 (95%), Gaps = 15/426 (3%)
Strand = Plus / Minus
Query: 236 acagttggtattgcctttgagagctaactggatcacaagagccattgatgagttcttagt 295
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 683 acagttggtagtgcctttgagagctgactggatcacaagagccattgatgagttcttagt 624
Query: 296 tgaatatactattaggaaatttcaaaactgaagaaagtaggccctggaagcagtgttttg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgaatatactattaggaaatttcaaaactgaagaaagtaggccctggaagcagtgttttg 564
Query: 356 aagagtgtatcttgatctttccctgttctgttgactctgctgtccagagatgagctaaac 415
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 563 aagagtgtatcttgatctttccctgttctgttgactctgctttccagagatgagctaaac 504
Query: 416 aggttgctaccatcagccctctccataatggtatttaacctcaccacagactcagtgaag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggttgctaccatcagccctctccataatggtatttaacctcaccacagactcagtgaag 444
Query: 476 ggcttagagacattggaaagaatcctctaaaacttcaagccaaaagttagctttcttcct 535
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggctt-------------agaatcctctaaaacttcaagccaaaagttagctttcttcct 397
Query: 536 ccaagccagctttctcagatgccctgtttataatg--aaaaaaactccaaactccccact 593
||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 396 ccaagccagttttctcagatgtcctgtttataatgaaaaaaaaactccaaactccccact 337
Query: 594 gactgcatctttcatggaccctattttctctcttcttgtgactatcaatttgacattgtc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gactgcatctttcatggaccctattttctctcttcttgtgactatcaatttgacattgtc 277
Query: 654 taatat 659
||||||
Sbjct: 276 taatat 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
