BAC Information

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BAC

Clone NameMSMg01-188K08
ChromosomeX (Build37)
Map Location 5,530,193 - 5,530,485
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042275, LOC668967, LOC434724, LOC100043935, LOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972
Downstream geneNudt11, LOC208428, AU022751, Nudt10, Bmp15, Shroom4, LOC100043937, Dgkk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188K08.T7 (MSMg01no188_k08.b1)MSMg01-188K08.TJ (MSMg01no188_k08.g1)
ACCAG379599AG379600
length816728
length of high quality
(start - end)
297 (61 - 357)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no188_k08.b1 PHD_FILE: MSMg01no188_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:21 2005CHROMAT_FILE: MSMg01no188_k08.g1 PHD_FILE: MSMg01no188_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTGACTGTTTTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCTACCTCTTTCTAATAAGTCCCCTTGTATT
TTCATGTAATTTGTTTTGTTGCTGTGACCAAGTGAGTTTAATTAAGTTTA
TTTGCATGATCATAAATTGTACATTATTTGCTGGAAAACATGCAGCTTAT
CAGTGGTTATATCACTGAAGAAACTTGACTGTGCCTCACTGAGCGTTAAC
TGCTGAAATATTGAAGGGTCTAGTTTTATGTAGGTCAATAGGTCAAAAGA
TGCCCAGAAGACAATGTTTCATAGCATTCTACCCCTCTATCCATACTGTC
TCCTGTGTCATTTCTTACTATGTTAAATACATACCCGAACGAACCCCCGA
ATTAAACATTAAAAAGGAGGATATCCTGCACCTTTTTGATATAAAAAAAA
ATGCTGATTTAGTCCGGTATACATGTATAAAAATCCCCATAATAATAGTC
TAAGACACAAGACTTCTTTGATTGTTGCATGATATTTACATCTCTTTAAA
CATTCTTGAAACGTTCTGTTACCAAAAAACTGTATTCTGTACTACTTCCT
AATTATTCTGATTAACATCTTCTATATTCCATCTTCTTTTGTAGCCTCCC
CTAATATTTACATAAACAAAAACTATTAATATGGTTGGCAGTTTCACGGA
TTCCTAGCTTATATCCTGTATTTGGTCTCTTATCCTGTATTATCACACTA
TCAAAAATTCAGAATTATATACTATGCATTAAAATTTTATTTTGTTTTTA
TCCCCCCCTTTTTTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAAGTAATAGGCTAATTAGTTTGTT
GGGAGAAGCTTAGAGACAGGAAGGCACTCAGGCTGTGTCCTGGTTACTGC
TCAGTGCTCTCACACGGGTCTGCAGAGACAAGAGAGCAACAAGTGAAGCA
GAAGGGCGTGGACAAAGCACAGATTGTTAAGGAAAGAAACAGAGTCCAAA
GATACAGACCAAACACAGCTTGAAGTAATGTGCCCCAGTACAGAGAAGGA
AGCCTTGCAGTCTACACTGGCAGAGTAGGGATGGCGCCCAGAGGGCAAGG
CCCTGCCCACTGAATTTTTATCACTCCTACACGTGCAAATGTATGGGAAA
GGAGAGGCGCCGATGCTGTCCTCTGCTCAAAGGTACCACCACCCCAGAAA
TCCATCTGCTCTGACTGAACCACCAAGGTGGACAGAGGTCACTACTGCTT
TGGTCTTGGAGGAACATAGGACATCTCAAGCCGATGTGTCAGCATCCTCC
TGCTGCTGCTGGCTTTGCAGGCTCGCAGAATTCAAGGTCCAGGGATAAGA
GAGTTTTGCGTCAAGGTTCATTGAAGCCTCTGGGACCCAGTAGGCACAGT
TTGGTAGGCCGTATGTATCATATTTCCTGCTATGAGGCCCCCTGGTTGTT
GTCGTTAAGCTGTGTCGCGCTCCGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_k08.b1 MSMg01no188_k08.b1 CHROMAT_FILE:
MSMg01no188_k08.b1 PHD_FILE: MSMg01no188_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:21 2005
         (297 letters)



>mm_chrX_5529989_5530685
          Length = 697

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctacctctttctaataagtccccttgtattttcatgtaatttgttttgttgctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaattcctacctctttctaataagtccccttgtattttcatgtaatttgttttgttgctg 438

                                                                       
Query: 65  tgaccaagtgagtttaattaagtttatttgcatgatcataaattgtacattatttgctgg 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaccaagtgagtttaattaagtttgtttgcatgatcataaattgtacattatttgctgg 378

                                                                       
Query: 125 aaaacatgcagcttatcagtggttatatcactgaagaaacttgactgtgcctcactgagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaacatgcagcttatcagtggttatatcactgaagaaacttgactgtgcctcactgagc 318

                                                                       
Query: 185 gttaactgctgaaatattgaagggtctagttttatgtaggtcaataggtcaaaagatgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gttaactgctgaaatattgaagggtctagttttatgtaggtcaataggtcaaaagatgcc 258

                                                                
Query: 245 cagaagacaatgtttcatagcattctacccctctatccatactgtctcctgtg 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cagaagacaatgtttcatagcattctacccctctatccatactgtctcctgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)