BAC Information

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BAC

Clone NameMSMg01-189A14
ChromosomeX (Build37)
Map Location 129,238,785 - 129,239,058
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC245600, EG631264
Downstream geneLOC665846, LOC665850, LOC665854, LOC100040794, Pcdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189A14.T7 (MSMg01no189_a14.b1)MSMg01-189A14.TJ (MSMg01no189_a14.g1)
ACCAG379856AG379857
length714730
length of high quality
(start - end)
315 (45 - 359)280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no189_a14.b1 PHD_FILE: MSMg01no189_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:54 2005CHROMAT_FILE: MSMg01no189_a14.g1 PHD_FILE: MSMg01no189_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATAGTGCTGAAAACAACAAAATAGACAGAAATCTGCTACTGTTT
GAGCATGGGGAATTTTTTTATTATTATTATATGTTAGTAAGTACACTGTA
GCTGTCTTCAGACACTCCAGAAGAGGGGGTCAGATCTTGTTACAGATGGT
TGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGA
ACAGTTGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCGCATGGGG
AATCTTAAGACATTAAAGATTACCGAGTAAGAAGACACTAGTTGCACTTT
TAACAGGGGGTTTNATTCCATCTCAGNACTNNCCTTGAAGGTGATTATGG
CTCCCCAATAGTTCTCTTGGTTTCCAATGAAAAAAACGGAACACTTGCTC
TCATACATCTTCATACTAAAGTCTAAACAAATATGAACAACTAATTTAAA
ACTTAATTCATTATATCTATGTGTTGAAATACAGCTCTTGGTAACCCAAT
CACAAAAGAAGTCACTTGATATGCACTCACTAATAAGTGGATATTAGCCC
AGAAACCTAGAATACCCAAGATACCACTTCCTTAATACAAGAAAATCAAG
AAGGAAGATCAACTTGTGGATACTTTGTTCCTCCCTAGAATAGGGAATAA
AATATCCATGGAAG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAAAGAGATAAAAATACTGAAA
AAAAAACATACTAAAATAATGAGACTGAAAAAAAAATAAAAAATAAATCA
CATAAAAGTCAGTCAAAAACCCACCAATAAAATGGGTCCTCTAGAAAACA
AAGTACCAGAGTTTGAAGACAAAAGGTTAAAATGGGTGTGTAAATAAATG
ACAATGATTGCTTTTTAAAGAATGAAAGGAAGACAACATGAATTCCATAA
ATGGAGCATGAAAGAAACTTGTAAGTCATGAAAAGGTAAAACTTAAGAAT
TATTGTGATTTTTTAACACCCCCCCCCCAAGAAATATAAAATTATTTCAA
TAAAATCATAGAGGAAATGTTTTAAAATATAGGGAAAGAGAAGCTCATGT
GGATAACAGAGGCACAAAACATAAATCAGGCAGGTCAAGAAGATAAACCA
GCTATGTTATAGTTAAACCACTGAATATATAGTAAAACTAATGTATATTA
AACCCTGCAAAAGAAATGGGACAGGCCACATAGAAAGGAAGGCTCATAAG
AATAACTGACAACTTTTCAATCAAAGTATTAAACAGAAGAAAGTTTTGAA
ATAATGTACTTCCAATTCTGAAAGATAACTAGTTCAATCCCAGCCTGATA
CATCTGACAAAATTTTCTATCATAATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_a14.g1 MSMg01no189_a14.g1 CHROMAT_FILE:
MSMg01no189_a14.g1 PHD_FILE: MSMg01no189_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:54 2005
         (280 letters)



>mm_chrX_129238513_129239192
          Length = 680

 Score =  507 bits (262), Expect = e-148
 Identities = 273/280 (97%), Gaps = 6/280 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaagagataaaaatactgaaaaaaaaacatactaaaataatgagactgaaaaaaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 546 aataaagagataaaaatactgaaaaaaaaacatactaaaataatgagactgaaaa----- 492

                                                                       
Query: 61  taaaaaataaatcacataaaagtcagtcaaaaacccaccaataaaatgggtcctctagaa 120
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 -acaaaataaatcacataaaagtcagtcaaaaacccaccaataaaatgggtcctctagaa 433

                                                                       
Query: 121 aacaaagtaccagagtttgaagacaaaaggttaaaatgggtgtgtaaataaatgacaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aacaaagtaccagagtttgaagacaaaaggttaaaatgggtgtgtaaataaatgacaatg 373

                                                                       
Query: 181 attgctttttaaagaatgaaaggaagacaacatgaattccataaatggagcatgaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 attgctttttaaagaatgaaaggaagacaacatgaattccataaatggagcatgaaagaa 313

                                                   
Query: 241 acttgtaagtcatgaaaaggtaaaacttaagaattattgt 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acttgtaagtcatgaaaaggtaaaacttaagaattattgt 273


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)