BAC Information

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BAC

Clone NameMSMg01-189L14
ChromosomeX (Build37)
Map Location 141,517,837 - 141,518,129
singlet/doubletsinglet
Overlap geneZcchc16
Upstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, LOC666655
Downstream geneLOC623591, Lhfpl1, Amot, EG434860, LOC100039313, LOC623697, LOC623731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189L14.T7 (MSMg01no189_l14.b1)MSMg01-189L14.TJ (MSMg01no189_l14.g1)
ACCAG380310AG380311
length735752
length of high quality
(start - end)
---289 (85 - 373)
definitionCHROMAT_FILE: MSMg01no189_l14.b1 PHD_FILE: MSMg01no189_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:46 2005CHROMAT_FILE: MSMg01no189_l14.g1 PHD_FILE: MSMg01no189_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AAATCCGTCTCGGTTTCTAAGGCACCCTGAGAATATTAACTTTACCCACT
GCTAAATATATGACTTTTTTGCTTATAAAGAGTAGAGATACTTTAGTTGA
TACTTTGCCGCCAATGTAACTATGGGTGGTGTCATAATTCTCTAACATCA
CCTGAACAAATATAAGGCACAGATATTCAGTAAGCCAAGAGAACACATGT
TAACTCTTCTAAGAATGGACCTATCAAGATGGACATTTCATTGTTTATAA
CTGCGGATTTTTTTATATTTATCATTAGGAACATGATTATTCAAATCAGT
TTTTTCTCTTATTAGACTACTCTCCACCCCTTATCGAAGATAATGTAATG
CATCCTTTAAAGATGCCTATCAAACATCCTTTCTCCTTATGACTAATTTA
TACACTTCTTGGAATCTCATGCGTATAACATATGTTACTAACATAGAATT
CTAAAGGTGAATTAATGAGGAAAATATTTCGTAGGAAGAATGCGAGTAAA
ATACTTGCATATCCACAGACTCTTCCTAAAAGTGAACTGTTTAAATGATT
CATCATGATTGACTATATGATTTCCCACGATATGAAGACTGTTGCTATCT
CACATCAGAAATATATGTTGAGATTTGAACCGCCCTAGTAAGTGACTTCC
ATAAACTGTAACGACTATATAATGGAGATAAACCG
NNNNAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAAATGTTTATT
GGATATTTGTATTTCTTTTTAGCCATTACTGACAAATAAAGAAGCTACTG
ATTTTTTGTCTTTGTATCCTAGTTCACTGCTGAAAATGTTTATCAAATCC
AAGAGTTTTCTGTTGTTTATTTAAAGGTATTTTTTTTAAAAATCATCTTA
TTTCTTGAAAATAGGTGTAATTTCAGATTCCTCCTGTGCTATTAGAAATG
CTAACAGGTCTCTACCTGTTAGCATTTCTGCATTTTTTTTGGATCAAGGT
AAACCACATATTATATTGAATTTTATTTGACACACCCCCCACCCTTATCA
TGCTCCTGATCAGGAGAAAATACAGATTTACCCTATTTAGTATAAAATTG
AGTATAGATTTCCCACAAATGCTCTTTATTATATTTATGGATATTTCTTG
ATTCCCAGATTTTTCATAATTATTATAATGAAATGATATTAAACTTTGTA
AAAGATTTGATAAAATTTCTTCCATGTTTTGACTCAATCTGTGAGTGTGC
TTACCTGTGAGGTACATTTTTTGTATCATGAGATAGCTTTTAAATCAATC
ACTGAGCCAGTCTGATTCTCTTTTAAATAATCATTAACAAAAAAGCACGA
TAGTCCTACAAGTAGAGCGAAATGATATAAGCAACACATATTGGCTTTAA
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_l14.g1 MSMg01no189_l14.g1 CHROMAT_FILE:
MSMg01no189_l14.g1 PHD_FILE: MSMg01no189_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:46 2005
         (289 letters)



>mm_chrX_141517637_141518324
          Length = 688

 Score =  514 bits (266), Expect = e-150
 Identities = 284/294 (96%), Gaps = 8/294 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcaaatgtttattggatatttgtatttctttttagccattactgacaaataaagaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atttcaaatgtttattggatatttgtatttctttttagccattactgataaataaagaag 260

                                                                       
Query: 61  ctactgattttttgtctttgtatcctagttcactgctgaaaatgtttatcaaatccaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctactgattttttgtctttgtatcctagttcactgctgaaaatgtttatcaaatccaaga 320

                                                                       
Query: 121 gttttctgttgtttatttaaaggtattttttttaaaaatcatcttatttcttgaaaatag 180
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 321 gttttctgttgtttatttaaaggtatttttta-aaaaatcatcttatttcttgaaaatag 379

                                                                       
Query: 181 gtgtaatttcagattcctcctgtgctattagaaatgctaacaggtctctacctgttagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgtaatttcagattcctcctgtgctattagaaatgctaacaggtctctacctgttagca 439

                                                                 
Query: 241 tttctgcatttttttt-------ggatcaaggtaaaccacatattatattgaat 287
           ||||||||||||||||       |||||||||||||||||||||||||||||||
Sbjct: 440 tttctgcatttttttttttttttggatcaaggtaaaccacatattatattgaat 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)