BAC Information

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BAC

Clone NameMSMg01-191G17
ChromosomeX (Build37)
Map Location 66,733,709 - 66,733,995
singlet/doubletsinglet
Overlap geneAff2
Upstream geneLOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
Downstream geneEG666577, 1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191G17.T7 (MSMg01no191_g17.b1)MSMg01-191G17.TJ (MSMg01no191_g17.g1)
ACCAG381440AG381441
length829728
length of high quality
(start - end)
36 (109 - 144)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no191_g17.b1 PHD_FILE: MSMg01no191_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:01 2005CHROMAT_FILE: MSMg01no191_g17.g1 PHD_FILE: MSMg01no191_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCCTTTTTTTNNNATTCNCGACATTCATCCCCCTCTACATATNTTAAT
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATATGTGTCCTGTCCTAGTAAGATGTGTCAACTTGCCACACCATCTG
ACAGGAAAGCCTCAACTGATGGACTGCCTAGATCATATTCTCATATGTGC
GTGCCTGAGAAAGATTGTCAATTGCAAATTGATGCTGAAAAGCACTACCT
ATGGTGAATAACAGCAGCCCTTGCACACGTAGGCCTAATGCTATATAACA
AAGCTAACTATGGCGACTGGAAAGATGGCTCAATGGCTAAGAGCACTGCC
TGCTCTTCCAGATGTCCTGATTTCAATTCCCAGCAACCACATGGTAATTC
ACAACCATTTGTTTTTTTTATCCCCCCCCCCCTTCTGATGTGTCTGAAGA
CACCCATTTTGTACTCGTATATATAAAATAAATAAATAAATCTTTTGAAC
CTAATTAACAGCTAACTACGGCTGAACCCGCAGATAACTATACTCAAAAG
ACACTACACCGCCTACCTTTCACTTTTCCCCCATATTAAAGATTCCGAAC
CTGCACCCATAAACCCCTATACTTTCTTCCTCCCCTTTGTTGTTCCTCCC
GGTCAAAATTTTTTAATTATCATCCACCAACAGTTCGAACATTAAGAATA
ATTCCCACCTCGCCCCCATCCATATGTTCTAATTCATTTGTCAAGGTTGA
TATATTCCCAACTTATGGAACCACCTTGTACTTATTCCTCCCCCGTCTTC
TCTTTTTCCTACCTAACCCACCTCTCCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCATCATAATTTAATTTCTAG
TGGGATGTTTGCCCACAGTCATGTCTGCTTTTTCAAAGTCTACTTTCTAT
TGGGTAAGAGATAGAATAAAATATCTTCCTCACATACTTTATTTCTCTTC
CACAGAGTCAATAAATTTCCCTTAAAAGTTAATTTAGGGAGCATGTTAAA
TAAAGGAATACCACATTCAGTAATTACGTTGGCAAACACTGAAGGCAAGG
AATATCATTAAAATTACATTGTTTTAAATTCTTGTTATTCAGTCCAATGT
TTTCAAATAGTATTCCAATGCCCCGCCCCAGAAAGAACATAGAAGATAGG
AGCATTCATAAAGTATATAATGTCACCATGGTCAGGCAGGAAGCTGAGCT
AGAGTGTCACTCGTGAACATTGGCACAATGGAGCTTGGGCATTCATAGTC
AAGTGTTTTAACAGATAAAGGAAGCACTGGGTAGACGGTTATTGCATTAT
GCAGTGTAATATTTTCTATGGTGGAGTCCTGTGATGTAGCTTTTTAATTG
ATTACAAATGACAGCACCAAGTATGTTGTGATTTTGGAAGGTAAAACTTT
TCACTGGCATTTGGAATTTGGAATTTGGAAGGTGTTCTCCTGGGAAAAGC
TGGCATATTGCCTGCTACTTCTGGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_g17.g1 MSMg01no191_g17.g1 CHROMAT_FILE:
MSMg01no191_g17.g1 PHD_FILE: MSMg01no191_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:01 2005
         (287 letters)



>mm_chrX_66733509_66734195
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgccatcataatttaatttctagtgggatgtttgcccacagtcatgtctgctttttcaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ctgccatcataatttaatttctagtgggatgtttgcccacagtcatgtctgcttttccaa 260

                                                                       
Query: 61  agtctactttctattgggtaagagatagaataaaatatcttcctcacatactttatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctactttctattgggtaagagatagaataaaatatcttcctcacatactttatttct 320

                                                                       
Query: 121 cttccacagagtcaataaatttcccttaaaagttaatttagggagcatgttaaataaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccacagagtcaataaatttcccttaaaagttaatttagggagcatgttaaataaagg 380

                                                                       
Query: 181 aataccacattcagtaattacgttggcaaacactgaaggcaaggaatatcattaaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataccacattcagtaattacgttggcaaacactgaaggcaaggaatatcattaaaatta 440

                                                          
Query: 241 cattgttttaaattcttgttattcagtccaatgttttcaaatagtat 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattgttttaaattcttgttattcagtccaatgttttcaaatagtat 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)