BAC Information

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BAC

Clone NameMSMg01-193F12
ChromosomeX (Build37)
Map Location 121,317,722 - 121,318,226
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193F12.T7 (MSMg01no193_f12.b1)MSMg01-193F12.TJ (MSMg01no193_f12.g1)
ACCAG382688AG382689
length760753
length of high quality
(start - end)
540 (70 - 609)400 (128 - 527)
definitionCHROMAT_FILE: MSMg01no193_f12.b1 PHD_FILE: MSMg01no193_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:43 2005CHROMAT_FILE: MSMg01no193_f12.g1 PHD_FILE: MSMg01no193_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGAGATAGAACTAAAAATCCCTCCTTCACCTGGACAGGAACAGA
ATCTTCTAGAGGCCCTTGGTTACATCTGACATTTGTTAAAGTTCCCGTCA
TTGTGCATGGAGGTTTCTGAGCATGTGTTGCAGTTGATGAAGGTTTCACA
TTCCCTTTGGAAGATAACAATGTTTTCTTAGTCCCCTGGTTAGATGGAGA
AGATGTAAGAACCTCTGTATCAAATGGTAGATGTCACAGGGTATCTTACA
AAAATAGAGAACCTGTAGAAGACTTCCCCCCCCAAAAAAAAAAAAAACTG
AAAATTTTCTCAGGTCCTGGTTCAGATGGTGAATTTTTTAGGGCCTAGTT
TCAGATTTGGGTAGTCCCATAGCCCCTCTAAGAGACAAAGAATGTTTCTC
AGTTCCTTGAGTAGATGGAAATATTTGAGCCTTCCCATGAGCATGTTGAG
TAGATCCTAAAGCCCTTGTATTACTTTGTGATGGTTCTACAGTCCCCCGT
GGTGATATAGACTGTCACAGAATGTCTTATTCTGATTTGTATTTTGTACC
TTTCCTTGTGGGATGATATTAAGACTCTAGTGTTCCTTGTGCCAGTGATG
ACATTTCAACATTTTCTTTGTCAATGGAAATACCCTAGTGCAGATATTGA
AGAATGCTTAGTCTGTTTATAACGTATGTAAGTGGGCAACATGCTCTTGG
TTAGACCAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTCGG
GGTGAAATATTCAGGTGATGTTCAACCCATGAATCAGGAGCTGTCATGCC
ATATCAGGTGCTGAAATGTCACGCTGCAGGTTATAAAAGCAGCGCCATTT
TCCCGGTTCGGGATCTTCCTGATAAGCAAGCAATAAAGCTCTTACTGTGG
AAGATTCTAGTTTGTTGTATCTTTCTTGCCGGTCGAGCGGAACGCAATAG
TGAATAGCTTTTACCTCCCTGTTGTTGCTCTCCTAGTACTGACCAGAAAC
TGAGGTGCCATTTCCAGCTTACTGTGCTAGGACATAGTCATAGAACACAT
CTTCCTTCGAAAGCAGCTTCTAGGCTTCATTGAAAAACCTTAAATCTGTG
AATATTGGGAACAGAGTCTGTACATAGCTCAGTTGACAGAGTGACTGCCT
AGCATTTAGGATGCCTAGGACTCAGTGATTAGAGCTGTCTTTACTTTATT
GCCTTTTTGGGTCTACTTATTATATTGTAATACACTTGGGATCATAGAAA
GGGATATCATGATGACCTAAGACCAAGACTGTCAATGATGTTGGTTAGAG
TCTTCTCTTGTATCCTCAGGCTAAAGAGACCTGATACCAGAGTGACTCAC
ATTACTGAGAAACTTCAGTTTCTATTTCATTTCTTTTTAAGGCCTCTTAA
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_f12.b1 MSMg01no193_f12.b1 CHROMAT_FILE:
MSMg01no193_f12.b1 PHD_FILE: MSMg01no193_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:43 2005
         (540 letters)



>mm_chrX_121317495_121318435
          Length = 941

 Score =  398 bits (206), Expect = e-115
 Identities = 438/528 (82%), Gaps = 35/528 (6%)
 Strand = Plus / Plus

                                                                       
Query: 16  cctggacaggaacagaatcttctagaggcccttggttacatctgacatttgttaaagttc 75
           ||||||||||  |||||| ||||||||||||||| |||||| | | | |||||| || ||
Sbjct: 228 cctggacaggtccagaatgttctagaggcccttgcttacatttcaaaattgttagagatc 287

                                                                       
Query: 76  ccgt--cattgtgcatggaggtttctgagcatgtgttgcagttgatgaaggttt-cacat 132
           | ||   | |||| | ||||||||||||||||||| ||||| ||||||| |||| |||| 
Sbjct: 288 ctgttgtagtgtg-a-ggaggtttctgagcatgtggtgcagatgatgaa-gtttccacag 344

                                                                       
Query: 133 tccctttggaagataacaat-gttttcttagtcccctggttagatggagaagatgtaaga 191
           |||||| |||||||||||||  |||| ||||| |||||| |||||||||||||||| || 
Sbjct: 345 tcccttgggaagataacaatactttt-ttagttccctgggtagatggagaagatgtcagt 403

                                                                       
Query: 192 acctctg-tatcaaatggtagatgtcacagggtatcttacaaaaatagagaacctgtaga 250
            |||||| || || ||||| |||||| |||||||||||  | | |||||||| |||||||
Sbjct: 404 gcctctgtta-cagatggtggatgtcgcagggtatcttgtatagatagagaaactgtaga 462

                                                                       
Query: 251 agactt---ccccccccaaaaaaaaaaaaaactgaaaattttctcaggtcctggttcaga 307
           || |||                  |||| || ||||||||||| ||||||||||||||||
Sbjct: 463 agccttttg---------------aaaagaagtgaaaattttcacaggtcctggttcaga 507

                                                                       
Query: 308 tggtgaattttttag-ggcctagtttcagatttgggtagtcccatagcccctctaagaga 366
           ||||||||||| ||| | |||||||||||||||||| ||||||||||||||| || ||||
Sbjct: 508 tggtgaattttctagagacctagtttcagatttgggcagtcccatagcccctgtaggaga 567

                                                                       
Query: 367 caaagaatgtttctcagttccttgagtagatggaaatatttgagccttccc-atgagcat 425
           || ||||||| ||||||  || ||| |||||||||||||||||| | |||| ||||||||
Sbjct: 568 cagagaatgtatctcagccccgtgattagatggaaatatttgagac-tccctatgagcat 626

                                                                       
Query: 426 gttgagtagatcctaaagcccttgtattactt--tgtgatggttctacagtcccccgtgg 483
           ||||||||||||||||||||| ||| |||  |  |||||||||||||||||| || || |
Sbjct: 627 gttgagtagatcctaaagcccctgtctta--tgatgtgatggttctacagtctcctgtag 684

                                                           
Query: 484 tgatatagactgtcacagaatgtcttattctgatttgtattttgtacc 531
           |||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 685 tgatatagactgtctcagactgtctttttctgatttgtattttgtacc 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space:   493430
Effective search space used:   493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)