TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATCAGACGTTCAAAGAAGGCCTAATTCCAAGTCTCCTCAAAATAT
TCCACAAAATAGAAACAGAAGACACTCTACCCAATTCATTCTATGAAGCC
ACCATTACTCTGATACCTAAACCGCATAGAGACCCAACAAAGAAAGAGAA
CTTCAGACCAATTTCCCTTATGACTATTGATGAAAAATACTCAATAAAAT
TCTCAAAAACTGAATCTTAGAACACACCAAATGATTATCCATCATGATCA
AGTAGGTTTCATCCCAATGATGCAAAGATGGTTTAATGATCTTCTCATTA
GATGCTCAGAAAGTATTTAATACAACCCAACACTCATTCATGATAAAAGT
CTTGGAAAGATCAGGAATGCAATGCCCCTACATAAACATTATAAAAGCAA
TATACAGCAAACTAGTAGCCAACATCAAACTAAATGGAGAGAAACTTGAA
GCAGTCCCACTAAAATCAAGGACTATACAAGGCTGCCCATTTTCTCCCTA
TCTATTCAATATAGAACTTGAGGTCCTAGCCAGAGCAATTAGACAACAAA
AGGGGGTCAAGGGGATACAAATTGGAAAGAAAGAAGTACAAATATCACTA
TTTGCAGATGGTATGATAGTATATATAAGTGACTCTAGAAAGTCTACCAG
AGAACTCCTAAATCTGATAAAN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTAAATGTTTACCAGAAAATTT
GTCTGAAGATATAAGTACAGTCTTTCCATTGAGCAAGCTTTTTTCAAGAC
ACAAGTTTGAATATGAATGTGTTTGTCACAAAGATGTTTTTGTCAAATTG
TATGAATCTTCAAATTTGAGGGTTTTAAAGTTTTTCTGCTAAGAAAACTA
ATGTATTATGCTTACCTTTTTCTTAGTCTTTCAGAAACCTGGTATCACCC
ACTTACTGCATTATATTTTCAATATAAATGCTTACTGACTTCATTGAATT
TCACATGAGAAAAATCCCTTTATAAACATATTTTGCTTTGTAATTACTCA
TGACCTAGTTTCAGTGAATTTGCAAATATGGAAACGTCATAGGATATAAC
AAGGAAAAATACTTTAACTTCAGGGGTTTCATTGTGAACATAAAACAGGA
GAGCAATTTCAATTTATTTTTTCATAATAGCCATGCAATATGAGCAGTCA
GCTTAATTAAGTCAAGCCTGAAATATCAACAGTGTTCTATTTCCATAGTA
TCAGTCATTTTGCTTAGGAAATAAATTGATAGCAAAATTGTGTATCCTGC
AGACAAAGTCCCCTAAGAGGTTATCAGATTTTCATGTTAGGACATACTGT
ATGGGGTTTCAGAAGTATAAN

Query= MSMg01no193_k20.g1 MSMg01no193_k20.g1 CHROMAT_FILE:
MSMg01no193_k20.g1 PHD_FILE: MSMg01no193_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:15 2005
         (590 letters)



>mm_chrX_78343997_78344986
          Length = 990

 Score = 1102 bits (570), Expect = 0.0
 Identities = 585/590 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagcaagcttttttcaagacacaagtttgaatatgaatgtgtttgtcacaaagatgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagcaagcttttttcaagacacaagtttgaatatgaatgtgtttgtcacaaagatgttt 260

                                                                       
Query: 61  ttgtcaaattgtatgaatcttcaaatttgagggttttaaagtttttctgctaagaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcaaattgtatgaatcttcaaatttgagggttttaaagtttttctgctaagaaaact 320

                                                                       
Query: 121 aatgtattatgcttacctttttcttagtctttcagaaacctggtatcacccacttactgc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtattatgctcacctttttcttagtctttcagaaacctggtatcacccacttactgc 380

                                                                       
Query: 181 attatattttcaatataaatgcttactgacttcattgaatttcacatgagaaaaatccct 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 attatattttcaatataaatgcttactgatttcattgaatttcacatgagaaaaatccct 440

                                                                       
Query: 241 ttataaacatattttgctttgtaattactcatgacctagtttcagtgaatttgcaaatat 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ttataaacatattttgctttgtaattactcatgacctagtttccgtgaatttgcaaatat 500

                                                                       
Query: 301 ggaaacgtcataggatataacaaggaaaaatactttaacttcaggggtttcattgtgaac 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaacgtcataggatataacaaggaaaaatactttaacttcaggggtttcattgtgaac 560

                                                                       
Query: 361 ataaaacaggagagcaatttcaatttattttttcataatagccatgcaatatgagcagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaacaggagagcaatttcaatttattttttcataatagccatgcaatatgagcagtc 620

                                                                       
Query: 421 agcttaattaagtcaagcctgaaatatcaacagtgttctatttccatagtatcagtcatt 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 agcttaattaagtcaagcctgaaatatcaactgtgttctatttccatagtatcagtcatt 680

                                                                       
Query: 481 ttgcttaggaaataaattgatagcaaaattgtgtatcctgcagacaaagtcccctaagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgcttaggaaataaattgatagcaaaattgtgtatcctgcagacaaagtcccctaagag 740

                                                             
Query: 541 gttatcagattttcatgttaggacatactgtatggggtttcagaagtata 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttatcagattttcatgttaggacatactgtatggggtttcagaagtata 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)