BAC Information

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BAC

Clone NameMSMg01-194H22
ChromosomeX (Build37)
Map Location 149,455,780 - 149,456,093
singlet/doubletsinglet
Overlap genenone
Upstream geneSmc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130, Shroom2, Gpr143, LOC100039874, LOC667147, EG624124, Usp51, LOC635253
Downstream geneMageh1, EG385454, EG436240, Rragb, Klf8, LOC100039932, EG635136, Ubqln2, Cypt3, LOC100039998, LOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194H22.T7 (MSMg01no194_h22.b1)MSMg01-194H22.TJ (MSMg01no194_h22.g1)
ACCAG383394AG383395
length705711
length of high quality
(start - end)
316 (45 - 360)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no194_h22.b1 PHD_FILE: MSMg01no194_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:22 2005CHROMAT_FILE: MSMg01no194_h22.g1 PHD_FILE: MSMg01no194_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:22 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGGCCTATTTGGGCTTCCTGAAATATACCCTCCTCCCCTTCTCAA
ATCAACAACAATCACAGCTGAAACCACACTCTCCTAGTTTGGGGAGCTTC
TCCTGAAAGGGCTCAGGGGTCATCTAGAGTTCTGGTGAGCATGAAACAAT
CACCCTGATTAATATGAAGGGATTTTCATCAGTCTGCCAATTGTTTTACA
GAACACTGGATGTCAACCAACTTTCTGTGGAGCAATGTGTCTAAACTCTT
AGAAATTCTACACATTATTATTTGATATCATATCTTAAAGTTTATGTGTC
TGTGTTCATACTCTTGTATGTCCCCCCGACAACAAGCACATAGGACTACA
TTGTCAGAAGTATACCACGCGCAACCTAATAAGTACAACAGAGTTGGAGT
CATGCCTCTAAGTATGCTTTACAGGTGTGTATTTCATTCTCCTGGGTATC
ATAATGAATGTCCATGAATGGCAGTAATTGGGAAAATAGCACATGTGTTT
GGTCACTCTCCTGTGGGTGGGTGATCGAATAGGTTGGCAGAACCCTGATT
CCTCAATTGTCATAGAGATGCAGAATCCTGCGCTCTAGGGCCATCCTGCT
GCTCCTTTCCTGGAGGCTCTCCTCCTCGAAACCTGTTTTGATATAAATTG
TTCCC
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAACGCTTTTTCTGCATCTAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCAGTTAGCGAGA
ATTTTATTGAGGATTTTTGCATCGTTATTTTTAAGAGAAATTGGTCTGAA
GTTCTCTATCTTTGTTTTTTTTCCCCCCCCCCCCCCTATNAGAGTAATAG
TGGTTTCATAAAATGTGTCCCCCCCAAAAAAAAAAAATCTACTTTGTGAG
GGAGTCTGCGCATATCTGTATTTATATCTTCTTTGTCGGTCTGATAGAAC
TCCGTTTTATACTCGTCCGGTCCTGTCTTCTTTTTGGTTTTGATTCTTTT
ATATCTGCTTCCATTTTCTTATTCAAATTTCTTCTCCCTTATTCTTTATC
TTTTTTTGCTTATAATTTCCTTTCCCGTCTTCGATATCTTTTTTTGCCAT
TTATACCCCTATTATTAATACTTTCCATTTTTTTCCCTCTTCCCTTCCCA
CCTTTTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_h22.b1 MSMg01no194_h22.b1 CHROMAT_FILE:
MSMg01no194_h22.b1 PHD_FILE: MSMg01no194_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:22 2005
         (316 letters)



>mm_chrX_149455576_149456293
          Length = 718

 Score =  487 bits (252), Expect = e-142
 Identities = 298/314 (94%), Gaps = 2/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagggcctatttgggcttcctgaaatataccctcctccccttctcaaatcaacaa 64
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 205 gaattcagggcctatttgggcttcctgaaatataccctcctctccttctcaaatcagcaa 264

                                                                       
Query: 65  caatcacagctg--aaaccacactctcctagtttggggagcttctcctgaaagggctcag 122
           ||| ||||||||  |||  ||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 265 caaccacagctgaaaaaagacactctcctagtttggggagcttctcatgaaagggctcat 324

                                                                       
Query: 123 gggtcatctagagttctggtgagcatgaaacaatcaccctgattaatatgaagggatttt 182
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||  ||
Sbjct: 325 gggtcatctagagttctggtgagcatgaaacagtcaccctgattaatatgaaaggacatt 384

                                                                       
Query: 183 catcagtctgccaattgttttacagaacactggatgtcaaccaactttctgtggagcaat 242
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 catcagtctgccaattgttttacagaacactggatgtcaagcaactttctgtggagcaat 444

                                                                       
Query: 243 gtgtctaaactcttagaaattctacacattattatttgatatcatatcttaaagtttatg 302
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 gtgactaaactcttagaaattctacacattattatttgatatcatatcttaaagttgatg 504

                         
Query: 303 tgtctgtgttcata 316
           ||||||||||||||
Sbjct: 505 tgtctgtgttcata 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 718
Length adjustment: 9
Effective length of query: 307
Effective length of database: 709
Effective search space:   217663
Effective search space used:   217663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)