CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAGAATCTACACCTTTTTAAGACAGGAGGGCTGGGGAGAAGGTTC
AGTAGGTACAAGTGCTTGCTGTGCAGGCATCCAAAGTGTTCCTGAGAAAC
CATGCAAGAGTGACTGACCATCAGAGTGCCAGTGAGAACAAAAGCTCTGG
GCAACAAAAAGGTCAGCGTTGGGAGAAAACATTCAGGACACAAAAATCAA
GTCCTTTCTTCTGTCACCTCAGCTAATCCACGACAGATGGCTGCTTGGGA
AACTAAGTGGTGAGTGAGGTTCCCTTTACTACAACTACCCTGCAGCCATT
TGAGCTTTCTCTCCTTGTCTCACTGTCCAACCTTCTCAACCTTCCTACCC
GAAGGGGCATGAGTAGGACACTACATTAGGGGCCCACGTATAAAGCAATT
ACTTAGCACCGTTCTCAATTTCTGTGCTGCAATATATATTTGTGTTTGTA
ATTTTCATTAAAATCAACTGTCCAAGAGGCTGGGCGGTATTTATCCCGTC
TTAGCACATCTCAGTTGGGGAGATTTAGAGTATCGTTACAAGACTGTACC
TTTCTTAAAGGAACGCTGTCTTTGTCAACAGAAGGTATTCAGAGTACTTT
CTTGCCCGGGACTGTTAAATCCTTCGATGAGGTTTTTGTTACAGTCATCA
AGGCTGAGGTTTTCACTGGATTTCTTGNNGAATGCGGGAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCCACCCTGTTTGACGAGGCCCT
CCATCGGGATCTCGCGCCTTTTCGCGCTCGAAACCCTCAGCTTACCCTAC
TACAGAATGTGGATGATCTCTTGGTTGCGGCAGCCTCGAAGGAACTGTGT
CACCAGGGAACTGAGAGGCTCCTTGCAGAACTGAGTGACTTGGGGTATCG
GGTTTCGGCTAAAAAGGCACAAATTTGTCAAACTGAGGTAACCTACCTGG
GGTATACCCTCCGAGGGGGCAAAAGATGGCTCACAGAGGCCCGGAAGAAG
ACTGTTATGATGATCTCTTTCGCCAACTACCCCACGGCAGGTACGTGAGT
TTCTGGGGACTGCTGGCTTTTGTAGACTCTGAATTCCAGGCTTTGCAACC
CTAGCAGCACCTCTATATCCTTTGACTAAGGAAGGGGTTCCTTTCGAATG
GAAAGAAGAACACCAGAGAGCTTTTGAGGCTATCAAGTCATCTCTAATGA
CTGCCCCCGCACTGGCATTACCAGACTTGACTAAGCCTTTTGTCCTATAT
GTGGACGAGAGAGCGGGTGTAGCCAGGGGAGTGTTGACACAGGCACTGGG
ACCTTGGAAGAGACCTGTAGCCTATTTGTCAAAGAAATTAGATCCTGTTG
CTAGTGGATGGCCTACATGTCTGAAAGCTATTGCAGCAGTAGCTCTGTT

Query= MSMg01no194_p21.b1 MSMg01no194_p21.b1 CHROMAT_FILE:
MSMg01no194_p21.b1 PHD_FILE: MSMg01no194_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:03 2005
         (669 letters)



>mm_chrX_155933934_155934996
          Length = 1063

 Score = 1112 bits (575), Expect = 0.0
 Identities = 630/667 (94%), Gaps = 32/667 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgagaatct-acacctttttaagacaggagggctggggagaaggttcagtagg 62
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ggaattctgagaatctaaaacctttttaagacaggagggctggggagaaggttcagtagg 771

                                                                       
Query: 63  tacaagtgcttgctgtgcaggcatccaaagtgttcctgagaaaccatgcaagagtgactg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 770 tacaagtgcttgctgtgcaggcatccaaagtgttcctgagaaaccatgcaagag----tg 715

                                                                       
Query: 123 accatcagagtgccagtgagaacaaaagctctgggcaacaaaaaggtcagcgttgggaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 accatcagagtgccagtgagaacaaaagctctgggcaacaaaaaggtcagcgttgggaga 655

                                                                       
Query: 183 aaacattcaggacacaaaaatcaagtcctttcttctgtcacctcagctaatccacgacag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aaacattcaggacacaaaaatcaagtcctttcttctgtcacctcagctaatccacgacag 595

                                                                       
Query: 243 atggctgcttgggaaactaagtggtgagtgaggttccctttactacaactaccctgcagc 302
           |||||||||||||||||||||||||||||||||||||||||      |||||||||||||
Sbjct: 594 atggctgcttgggaaactaagtggtgagtgaggttcccttt------actaccctgcagc 541

                                                                       
Query: 303 catttgagctttctctccttgtctcactgtccaaccttctcaaccttcctacccgaaggg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 catttgagctttctctccttgtctcactgtccaaccttctcaaccttcctacccgaaggg 481

                                                                       
Query: 363 gcatgagtaggacactacattaggggcccacgtataaagcaattacttagcaccgttctc 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 480 gcatgagtaggacactacattaggggcccacgtataaagcaattacttagcacccttctc 421

                                                                       
Query: 423 aatttctgtgctgcaatatatatttgtgtttgtaattttcattaaaatcaactgtccaag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 420 aatttctgtgctgcaatatatatttgtgtttgtaattttcattaaaatcaactgtgcaag 361

                                                                       
Query: 483 aggctgggcggtatttatcccgtcttagcacatctcagttggggagatttagagtatcgt 542
           |||||||||||||||||||||||||||||||||||||                     ||
Sbjct: 360 aggctgggcggtatttatcccgtcttagcacatctca---------------------gt 322

                                                                       
Query: 543 tacaagactgtacctttcttaaaggaacgctgtctttgtcaacagaaggtattcagagta 602
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tacaagactgtacctttcttaaaggaacgctgtctttgtcaacagaaggtattcagggta 262

                                                                       
Query: 603 ctttcttgcccgggactgttaaatccttcgatgaggtttttgttacagtcatcaaggctg 662
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcttgcccgggactgttaaatccttcgatgaggtttttgttacagtcatcaaggctg 202

                  
Query: 663 aggtttt 669
           |||||||
Sbjct: 201 aggtttt 195


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1063
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1053
Effective search space:   693927
Effective search space used:   693927
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)