Query= MSMg01no195_b06.b1 MSMg01no195_b06.b1 CHROMAT_FILE:
MSMg01no195_b06.b1 PHD_FILE: MSMg01no195_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:10 2005
(646 letters)
>mm_chrX_143699219_143700264
Length = 1046
Score = 356 bits (184), Expect = e-102
Identities = 542/682 (79%), Gaps = 60/682 (8%)
Strand = Plus / Plus
Query: 8 ttctttagaagtcccaagggatctagcacctttg--aagtctaccaaa-ttttcatatct 64
|||||| | |||| ||||||||||| ||| |||| | ||||||||| ||||| |||||
Sbjct: 182 ttctttggtagtctcaagggatctatcacatttgcta--tctaccaaacttttcgtatct 239
Query: 65 gttgaggcatgtctaggcct---ttcactatatgctcaacagtctatccagctgtcatca 121
||| ||||| ||| || || |||| || | |||||||||||||||||| |||||||
Sbjct: 240 gttcaggcaactctgggtctgtcttca-taca--ctcaacagtctatccagcagtcatca 296
Query: 122 tcttccc-aaaagattctgggaacatc-agagtgtgccaagtgtattcattaacattttt 179
|||||| ||||||||||||||||||| | | | | || |||||| |||| ||||||| |
Sbjct: 297 tcttcctgaaaagattctgggaacatcca-acttttcccagtgtactcataaacatttgt 355
Query: 180 ctttcgtctcaggttctttgggaatgtattcatgtgt-cctatgga-tgacaggaacatt 237
|||| |||||||| ||||| ||||||| ||||||||| || | | | || ||||||||||
Sbjct: 356 ctttggtctcaggatctttaggaatgtcttcatgtgtgccaaag-actg-caggaacatt 413
Query: 238 gctacaagtcccaaagcctattggacattcctcaccaatacaagcatgtcaatcccctcc 297
|| ||| | |||||||||| || | ||||||||||||| ||||||| |||||||||||||
Sbjct: 414 gccacatgccccaaagcctcttagccattcctcaccaacacaagcaagtcaatcccctcc 473
Query: 298 accatctatg--aaaagaaactgtgacaact----tgtattcacaagcaactcttg---t 348
||||||| || ||||| ||||| ||| | ||||| ||||||||||||||| |
Sbjct: 474 accatctttgcaaaaag---ctgtggcaaatgccctgtatccacaagcaactcttgagct 530
Query: 349 -a--gcat------aaatctctccattgttctcaccatctactcaggtgaatggacaagc 399
| |||| |||| | | |||| ||||||||||||||||||| |||||||||
Sbjct: 531 gaatgcatcagcacaaattttttcattacactcaccatctactcaggtgcctggacaagc 590
Query: 400 ttacctcaat-caagaatctactttgggacagcccatagctgcccagggagttcaacaac 458
| ||| ||| || ||| | |||||||||||| |||||||||| | ||||||| || |||
Sbjct: 591 ctcccttaatgca-gaaaccactttgggacagaccatagctgcacggggagttgaagaac 649
Query: 459 ttttg--ttgtccagcccagg---------ttataaagaaagtgacaagcaggaaatagg 507
||||| || | | |||||| ||||||||||||||||||||||||| ||||
Sbjct: 650 ttttgcctt--caaacccagggactctaggttataaagaaagtgacaagcaggaactagg 707
Query: 508 aatttttccatcttaccaagtacttctgggaatttccttacctgcagagggaa--tggta 565
||||||||||||| |||||| | |||||||||||| ||||||| ||| |||| | ||
Sbjct: 708 aatttttccatctgcccaagtgcctctgggaatttctttacctgtagaaggaactt--ta 765
Query: 566 ggatcatgaccatctgtacaaagggttctgggaacttcccta-tctgtccaagagtctgt 624
||||| || ||| || |||| |||||||||||| | ||||| | || |||||||| | |
Sbjct: 766 ggatcttggtcatttgcacaaggggttctgggaaatcccctaat-tggccaagagtatct 824
Query: 625 gttcacacccaaacaagaacct 646
|| |||| ||||||||||||||
Sbjct: 825 gtccacatccaaacaagaacct 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_b06.g1 MSMg01no195_b06.g1 CHROMAT_FILE:
MSMg01no195_b06.g1 PHD_FILE: MSMg01no195_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:10 2005
(490 letters)
>mm_chrY_1311011_1311898
Length = 888
Score = 387 bits (200), Expect = e-111
Identities = 399/472 (84%), Gaps = 26/472 (5%)
Strand = Plus / Minus
Query: 14 attgtatgaagttctcaaggaattaattaatgtagttcttaatata-ca-atgtctgtac 71
||||||||| ||||||||||||||||| || || |||||| ||||| || | |||||||
Sbjct: 883 attgtatgatgttctcaaggaattaataaaagtggttctttatataccaca--tctgtac 826
Query: 72 tgaacatatacagaccacttatatttcaatctcctaaatagcaactcattttatagcact 131
||||||||||||||||||||||||| | |||||||||||| |||||| || ||||||| |
Sbjct: 825 tgaacatatacagaccacttatattgccatctcctaaataacaactccttgtatagcagt 766
Query: 132 tacattaaattaagtgcaaaagtaatccagagattatttaaaataaagaaggatcagggg 191
| |||| |||||| ||||||||||||||||||| ||||||||||||||| || | | ||
Sbjct: 765 ttcattgcattaagggcaaaagtaatccagagatcatttaaaataaagaaagacctgtgg 706
Query: 192 atatggcccagag--acaatgccaggagtgtgt--tcaaacattcacctacaacaccagt 247
| ||||||||| | | |||| |||| || || |||||||||||||||| ||||
Sbjct: 705 agatggcccaggggta----gcca--agtgagtgatcccacattcacctacaacaacagt 652
Query: 248 gcttaagattttgggaggggcagagacaggaagatgattgtggcttcctgaaagccaggc 307
||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 651 gcttaggatg--gggaggggcagagacaggaagatgactgtggcttcctgaaagccagcc 594
Query: 308 tcactacc-agctcagcaagaaacccagtcacaagggga-taagttatgtag-gaaaaga 364
|||| || |||||||||||| ||| |||||||||| | ||| ||| | || ||| ||
Sbjct: 593 ccact-cctagctcagcaagagacctggtcacaaggg-agtaaattagggagtgaag-ga 537
Query: 365 gtagatcacactatacccttccctagcctctgaacttacctgtacagttctctatgcaga 424
| ||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct: 536 gcagagcacacaatacccttccctagcctctgaacttacctgtacaggtctgtatgcata 477
Query: 425 ctcacataaatatgattaaa--atatgcaagaggttattttgcatagcttat 474
| |||||||||||||||||| |||| |||||||||| |||||||| ||||
Sbjct: 476 cacacataaatatgattaaagtatat--aagaggttatgttgcatagattat 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 888
Length adjustment: 10
Effective length of query: 480
Effective length of database: 878
Effective search space: 421440
Effective search space used: 421440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
