CCCTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAACTTCTGCCAGAAAAATGGAAGTCCAATTTTCTGCT
CCTGTTTTCCATGTATCAGGTGTAATGGATATCTCTATGTTAGACATTTC
CATATCTTTTCTTTTGGCCAGACTTTAGTGAGACTATGTATTAACTGATA
TTTATTTTCACGGATAATACCAACAATGATCCTGGCAATTTCATTGTTAC
ATAGCTACATCTTAGTATAACAAAATTTTTTCTGGATTCTTCTTTATGTG
GACAAGCTTTTATCCTTTGCTAAATTACCTAATGCTTCCTTTCTTGACTT
ATTTTACTCTATACAAAAAAATAAACACTGCGGATAGTATTTTCCAGGCT
AAAACAAAGGTTAATTTACAATGTTTATTGATAGTTACATAGCAACATAA
AAGATTAATTTTAAGGGAAGATATAAAGGGAAATAAATAATCTCCAACTA
TCATATTAATATCCATTTTCTGGGTTTTCTACTGACCTACAACTAACAGA
GATATTATCACAAATCTAAGTAGATTTTGAAATGTTTTTGTTCTATATGA
ATTCCTTTAATCTAAGTAGTAATTCATTTATATTGCAACAGCATTGATAT
TCAATCTTTGATAAATCATATAAAAGCCTATGATGGAAATCTTCTGCTTG
TTCTTATCTTACTTTGTACATAAATTGCCTCATGAATAA

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGAAAGATACTGTTTG
AATTTGGTTTTGTTATCAAATACCTTGGTTTCTCCATCTATGGTAATTGA
AAGTTTTGTTGGGTATAGTATCCTGGTCTGGCATTTGTGTGCTCTTATGG
CATATATAGCATCTGTCCAGGATCTTCTGGCTTTCATGGTCTCTGGTGAG
AAGTATGTTGTAATTCTAGTAGGCCTGCCTTTATATGTTACTTGACTTTT
TTCACTTACTGCTTTTAATATTCTATTTATTTACTGCATTTGTTGTTCTG
ATTATTATGTGTCTGGAGGAATTTCTTCTCTTGTCCAGTCTATTTCGAGT
TCTGTAGGCTGCTTGTAAGTTCATGGGCATCTCTTTCTTTAGGCTAGGAA
AGTTTCCTTCTATAATTTTGCTGAAGATATTTGCTGTTCCTTTAAGTTGA
TAATCTTCATTCTCATCTACTCCTATTATACATAACTTTGTTCTTCTCTT
TGCGCTCTGTATTTCCTGGATGATTTGTGTTAGGATCTTTTTGTATTTTA
CATTTTTTTCTATTATTCTCGCCCATGTAGTCTATGTCATCCTTCTGTAT
CTGACACTCTCTTCTACATCTCTTGTTTTTTTGTATTCCTTTGCTTATCT
TTTGTTCATCCCGACTGCGCTTTTCCTTGGACTTTCCAATACCCN

Query= MSMg01no195_l14.b1 MSMg01no195_l14.b1 CHROMAT_FILE:
MSMg01no195_l14.b1 PHD_FILE: MSMg01no195_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:01 2005
         (609 letters)



>mm_chrX_118196403_118197412
          Length = 1010

 Score = 1110 bits (574), Expect = 0.0
 Identities = 598/606 (98%), Gaps = 1/606 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacttctgccaga-aaaatggaagtccaattttctgctcctgttttccatgtat 63
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gaattcaacttctgctagacaaaatggaagtccaattttctgctcctgttttccatgtat 751

                                                                       
Query: 64  caggtgtaatggatatctctatgttagacatttccatatcttttcttttggccagacttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 caggtgtaatggatatctctatgttagacatttccatatcttttcttttggccagacttt 691

                                                                       
Query: 124 agtgagactatgtattaactgatatttattttcacggataataccaacaatgatcctggc 183
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 690 agtgagactatgtattaactgatatttattttcatggataataccaacaatgatcctggc 631

                                                                       
Query: 184 aatttcattgttacatagctacatcttagtataacaaaattttttctggattcttcttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aatttcattgttacatagctacatcttagtataacaaaattttttctggattcttcttta 571

                                                                       
Query: 244 tgtggacaagcttttatcctttgctaaattacctaatgcttcctttcttgacttatttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tgtggacaagcttttatcctttgctaaattacctaatgcttcctttcttgacttatttta 511

                                                                       
Query: 304 ctctatacaaaaaaataaacactgcggatagtattttccaggctaaaacaaaggttaatt 363
           ||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct: 510 ctctatacaaaaaaataaagacagtggatagtattttccaggctaaaacaaaggttaatt 451

                                                                       
Query: 364 tacaatgtttattgatagttacatagcaacataaaagattaattttaagggaagatataa 423
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 450 tacaatgtttattgatagttacatagcaacataaaagattaattttaaaggaagatataa 391

                                                                       
Query: 424 agggaaataaataatctccaactatcatattaatatccattttctgggttttctactgac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agggaaataaataatctccaactatcatattaatatccattttctgggttttctactgac 331

                                                                       
Query: 484 ctacaactaacagagatattatcacaaatctaagtagattttgaaatgtttttgttctat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctacaactaacagagatattatcacaaatctaagtagattttgaaatgtttttgttctat 271

                                                                       
Query: 544 atgaattcctttaatctaagtagtaattcatttatattgcaacagcattgatattcaatc 603
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 270 atgaattcctttaatctaagtagtaattcatttatattgtaacagcattgatattcaatc 211

                 
Query: 604 tttgat 609
           ||||||
Sbjct: 210 tttgat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space:   599000
Effective search space used:   599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)