BAC Information

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BAC

Clone NameMSMg01-195O18
ChromosomeX (Build37)
Map Location 28,635,270 - 28,635,921
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664906, LOC664917, LOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364, LOC100039377, LOC100039386, LOC100039127, EG664944, LOC100039423, LOC100039145, LOC664951
Downstream geneLOC100042071, LOC664958, LOC664964, LOC100042087, LOC100039171, LOC100042103, LOC100042109, LOC100042115, LOC100042122, LOC100042135, LOC100042144, LOC664982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195O18.T7 (MSMg01no195_o18.b1)MSMg01-195O18.TJ (MSMg01no195_o18.g1)
ACCAG384252AG384253
length745744
length of high quality
(start - end)
661 (41 - 701)674 (71 - 744)
definitionCHROMAT_FILE: MSMg01no195_o18.b1 PHD_FILE: MSMg01no195_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:17 2005CHROMAT_FILE: MSMg01no195_o18.g1 PHD_FILE: MSMg01no195_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:17 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAAATTCATCCTGACACTTGATGTCATGTTGAGGTAAGGGTTCTTATGT
AGCACTGGAGATCAGATTGATGCCTGAGATCTAACCTGCCACAGGTAATT
TTGTTGATGTCCCTGATATTTTCATGTAGCACCTGCTATCATCCATGAAA
TGTACAATATTCTTACTACCACCAAAAGAGGTAGTGATGTCAGTGATCTA
TCTTGTTCCTGGAAAAGCGTTTTATGACCCTAATTTTTGTATGCCCTCTG
AATCAATGCTGATGTCACTAATATATACCTGGCAACAGACCCCATGTTAT
TGTCTGAGAATATTGTTGGCAATGGCAAAATTATTGTCAGTGATCCTAGT
TGACACTGGAACCATGTTGACTTCACTAATGCACAGGTGCCACAGAAATG
TGGATGATGTGAATCATGCATCCTGCCTCTAGTAGCCATGTTGAAATCCA
TTGTCTGTGTTGCTCCTGAAGGGACTGTAAATGTGAAGAATCCCTGAGAC
CGTCAGAATTTTCATTGAAGTTCACTCAATAATGCTATCTTAGGTCATGT
TGAGTTACATATTCTGAGTTATGTTATGATGCGGTATATATATATATATA
TATATACATATATATATATATATATATATATATATATATACTATATATAG
CTGCCTCTATATCCACATATATACATATGATATTTCAGATCTTTA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTAATG
GAGATATTTGATGGATAGTTCAATGCATCTTAGAAGCTGGGAACAAAAGA
GTGATGGAAGTAGTTACAGAGACAAAATGTGGAATGGAGACTGAAGAAAT
GACTATCCAGAGACTTATTTACCTGGGGATCCATCTGTGATGGTTTGTAT
ATTCTTGGACCAGGGAGTGGCACCATTTGGAGGTGTGGCCTTGTTGGAAT
AGGTGTGTCACTGTGGGTGTGGGCATAAGATCCTCACCCTAGTTTCCTGG
AAGTCAGTCTTCCACTAGTAGCCTTTGGATGAAGATGTAGAACTTTCAGC
TCCTCCTGCACCATGCCTGCCTGAATGCTGCCATGCTCCCACCTTTATGG
TAATGAATTGAACCTCTGAATCTATAAGCCAGCCCCAATTAAATGTTGTT
TTTTTTATAAGACTTGCCTTGGTCATGGTTTATGTTCACAGCCATAAAAC
CCTAACTAATATACCATCTCATATACAATCACCAAACCCAGACACTGTTG
TGGATGCCAACAACTGCTTACTGACAGTAGCCTGATATAGCTCTCTCCTG
ACAGGCTCTGCCAGAACCTGACAAATACATAAGTGGATCCTCACAGCCAT
GCACATAGGGTCCCCATTTAAGAAGCTAGAGAAAGGACCAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_o18.b1 MSMg01no195_o18.b1 CHROMAT_FILE:
MSMg01no195_o18.b1 PHD_FILE: MSMg01no195_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:17 2005
         (661 letters)



>mm_chrX_28635064_28636124
          Length = 1061

 Score = 1116 bits (577), Expect = 0.0
 Identities = 635/655 (96%), Gaps = 3/655 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaattcatcctgacacttgatgtcatgttgaggtaagggttcttatgtagca 64
           |||||||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||
Sbjct: 207 gaattccaaaattcatactgacacttggtgtcatgttgaggtaagtgctcttatgtagca 266

                                                                       
Query: 65  ctggagatcagattgatgcctgagatctaacctgccacaggtaattttgttgatgtccct 124
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 267 ctggagatcagattgacgcctgagatccaacctgccacaggtaattttgttgatgtccct 326

                                                                       
Query: 125 gatattttcatgtagcacctgctatcatccatgaaatgtacaatattcttactaccacca 184
           |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 327 gatactttcatggagcacctgctatcatccatgcaatgtacaatattcttactaccacca 386

                                                                       
Query: 185 aaagaggtagtgatgtcagtgatctatcttgttcctggaaaagcgttttatgaccctaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaagaggtagtgatgtcagtgatctatcttgttcctggaaaagcgttttatgaccctaat 446

                                                                       
Query: 245 ttttgtatgccctctgaatcaatgctgatgtcactaatatatacctggcaacagacccca 304
           |||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 447 ttt--tatgccctctgaatcaatgctgatgtcactaatatatacctggcaacagacaccg 504

                                                                       
Query: 305 tgttattgtctgagaatattgttggcaatggcaaaattattgtcagtgatcctagttgac 364
           || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 tggtattgtctgagaatattgttgacaatggcaaaattattgtcagtgatcctagttgac 564

                                                                       
Query: 365 actggaaccatgttgacttcactaatgcacaggtgccacagaaatgtggatgatgtgaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actggaaccatgttgacttcactaatgcacaggtgccacagaaatgtggatgatgtgaat 624

                                                                       
Query: 425 catgcatcctgcctctagtagccatgttgaaatccattgtctgtgttgctcctgaaggga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catgcatcctgcctctagtagccatgttgaaatccattgtctgtgttgctcctgaaggga 684

                                                                       
Query: 485 ctgtaaatgtgaagaatccctgagaccgtcagaattttcattgaagttcactcaataatg 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 685 ctgtaaatgtgaagaatccctgagaccgtcagaatcttcattgaagttcactcaataatg 744

                                                                       
Query: 545 ctatcttaggtcatgttgagttacatattctgagttatgttatgatgcggtatatatata 604
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 745 ctatcttaggtcatgttgagttacgtgttctgagttatgttatgatgcggtatatatata 804

                                                                  
Query: 605 tatatatatatacatatatatatatatatatatatatatatatatactatatata 659
           |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 805 tatatatatatatatatatatatatatatatatatatatatatata-tatatata 858



 Score =  110 bits (57), Expect = 3e-28
 Identities = 63/65 (96%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 595 tatatatatatatatatatatacatatatatatatatatatatatatatatatatactat 654
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 858 tatatatatatatatatatatatatatatatatatatatatatatatatatatata-tat 800

                
Query: 655 atata 659
           |||||
Sbjct: 799 atata 795



 Score =  110 bits (57), Expect = 3e-28
 Identities = 63/65 (96%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 595 tatatatatatatatatatatacatatatatatatatatatatatatatatatatactat 654
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 860 tatatatatatatatatatatatatatatatatatatatatatatatatatatata-tat 802

                
Query: 655 atata 659
           |||||
Sbjct: 801 atata 797



 Score =  108 bits (56), Expect = 1e-27
 Identities = 62/64 (96%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                       
Query: 596 atatatatatatatatatatacatatatatatatatatatatatatatatatatactata 655
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 861 atatatatatatatatatatatatatatatatatatatatatatatatatatata-tata 803

               
Query: 656 tata 659
           ||||
Sbjct: 802 tata 799



 Score =  103 bits (53), Expect = 6e-26
 Identities = 56/57 (98%)
 Strand = Plus / Minus

                                                                    
Query: 595 tatatatatatatatatatatacatatatatatatatatatatatatatatatatac 651
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 850 tatatatatatatatatatatatatatatatatatatatatatatatatatatatac 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 155
Number of extensions: 46
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 11
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)