BAC Information

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BAC

Clone NameMSMg01-197G23
ChromosomeX (Build37)
Map Location 62,096,549 - 62,096,916
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
Downstream geneLOC100040011, Ctag2, LOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197G23.T7 (MSMg01no197_g23.b1)MSMg01-197G23.TJ (MSMg01no197_g23.g1)
ACCAG385165AG385166
length7151,507
length of high quality
(start - end)
331 (378 - 708)---
definitionCHROMAT_FILE: MSMg01no197_g23.b1 PHD_FILE: MSMg01no197_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:19 2005CHROMAT_FILE: MSMg01no197_g23.g1 PHD_FILE: MSMg01no197_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGATCCAGAGCTGCCAAGTTAAAGATTAAAATGCTGAGCCTGAA
ATCTGACAACTATGTTTGCACCACCAAGCTGGATATGCAAAGAGTTCCAA
GAAATGATGATCCTACTTTACATCCTTTTGAAGTCCCACAAAGTATGCAA
AAGCTTTATATGCTTCCAAATTGCAAAGTGTACAAAACCATTCCTTGCTT
CCCTGGATGGTCACCATGATGGAGTCAGTTTCCTGGCAAAGTATCCAAAG
ATCCTGGCTACTATCATTTCTGGGGCATGTGATAGAGAGGTTAAAATTGG
GAACTTGACTATTTCTAAAATACATCTGAATTATAAAAGCACATGAAGGT
TTTCTATGAGGAGGTGCACCTGCTTTTGTAGGAACACAAAACTGTAAAGC
AGTGAAAAATCAGGTTATGTAGACAAGTAGGAGCCATTGCACACTATGTT
AGGAAAAACAATATATGTTGCCACTGATCATCACTGGAAAGACCTTGTCT
TTGCCACTTGTAGACAACAAGTAGACTTTTGTACAAAGAAAAAAACAACC
CATTGAACTCAATGAATTGGGGAGTTGACAGTATAAGTAGTGTTAAATTT
AACCCTATTGAGATTTATTTATTTATTTATTTATTTGCGAAGTTAGGCTT
TTGGTAGTAATATAG
GGGGGGAGAAGGGGGGCGGATTCAAGCGCCGTCCGCGGGGTCGGTTACCT
CAGACGTGCTCTTGGTTATATACCGTTATTAAGGTTTATTTGATAGATAT
ACGTGCGGGGTGTTTCCCCGCGCAGGTACGCCCCGCGATAGAATGAAGCG
CACGAAGCGGGTGGTTGAGTCTAATTGTGTGAGGTGTTGTTGTCGTGGCG
ATACGTTCGGGATGTTGATCAAGGCGGGCGCGACCGGTGAAAGGAGAATC
TTCGCCGTGCGTTGCGCCGAGTTTATCGGCGCCGCGCTGTGTGTTTTGCA
TTACCGCGCGCTTTATGTCTTTTGTCGCGGTATTCGCTTTTTTTTTATCT
GCTCTCGCTTCCTTATCTATTTCTCCGCTTTTTACCTTATCGCCAACGCC
CTCTGCTCTTGTCCGCTCCCTGAAGACAGCTATATATTGGTTTGTTTATT
CGGCCACTAGATCGCACCGAGTCGATCGTCCGCTAAAATTTTGACACTGT
GGTCCTGATCGTGGCGTGCGATATGTGGTTATGTGCACAGCATGTATTGT
AGGCGAGTGCAGCGAGCGGCAAGCGACGGCCGCTGTTGGGTTTCACGCTG
TCGGTTCTATTTTCCCTCCATACGCAGTGGCGCCGCGCGGTTGCGGTCCA
TTTGTTGATTTGCGCATCCGCCGCCGCGGACNACAGNGAACGCAGATGTG
CGGGCGGATTTGCGGCGTATTGTGAGGTTGTGTCTATTAGATCTTTATAG
TAATTATTATATCGCGCGCACTGTACCGGCACGACTGAGGTAAGGAGTCG
TATATGAATGTCGCGCCGTTTTATTATCGCGCGGGCGCCGCGTGTCAGTG
CGGCTGTGTTGCGCGGCTATTGTGTNGCGCGCTCGTGTCGCGCAGCTGAG
TCGATATGTCTCACTATACATGTAGCGGCANATGTCCGCGCTATGTATAT
GTTNTATGCGCCGGTGCGCTCGACCGCGCCTGCTTTGCTATCTCTNCGTA
TAACCTCTTCCATCGCGCAGACTTTCGACCTTATAGTGATCGAACTGTAT
ATTATGTGATGCCGTACCGTCGCCACTGGACGGCGCCGGTGNTGCGGTGC
CGCATGGTNAGCTCGTCATATCTAGAGTATAGTGATGTGGACGAGAACNA
ATTGATGTGTGGTGTGTTCACAATNGACGCCTACCGGTATCGAGTATTAG
GTGTCGCGCTGTCTGACATGTNAGTACGTATGTGTGTGATAAGAGAGTGC
GCCGACGTAGTGTGCGTCGCATGTATATAATATGCGCTCAGTGATCACTC
ACACACAGTCGTGTTGGTTGGTGTGTATTTATGCTCGNCGCGCCGCGCTG
CTGCGAACGCGACTATATATACGTACGGTATATACGGGGGCGTGGCTGCG
CGATATAGTGGAGTGTGGCGNCGTCATGGATGTAATNTANTTTGTGTGCG
CATTGTGTGGGATATGNTGATCGTGTGCGTGCACTACTCATNCTTGTCGT
AAATGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_g23.b1 MSMg01no197_g23.b1 CHROMAT_FILE:
MSMg01no197_g23.b1 PHD_FILE: MSMg01no197_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:19 2005
         (331 letters)



>mm_chrX_62096499_62097229
          Length = 731

 Score =  487 bits (252), Expect = e-142
 Identities = 322/368 (87%), Gaps = 37/368 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattataaaagcacatgaaggttttctatgaggaggtgcacctgcttttgtaggaacac 60
           |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 418 gaattatacaagcacatgaaggttttctatgaggaggtgcagttgcttttgtaggaacac 359

                                                                       
Query: 61  aaaactgtaaagcagtgaaaaatcaggttatgtagacaagtaggagccattgcacactat 120
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 358 aaaactgtaaagcagtgaaaaatcaggttattttgacaagtaggagccattgcacactat 299

                                                                       
Query: 121 gttaggaaaaacaatatatgttgccactgatcatcactggaaagaccttgtctttgccac 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 298 gttaggaaaaacaatatatgttgccattgatcatcactggaaagaccttgtctttgccac 239

                                                                       
Query: 181 ttgtagacaacaagtagacttttgtacaaagaaaaaaa-------------------caa 221
           |||| |||||||||||||||||||| |||| |||||||                   |||
Sbjct: 238 ttgtggacaacaagtagacttttgtccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaa 179

                                                                       
Query: 222 -----c-------------ccattgaactcaatgaattggggagttgacagtataagtag 263
                |             |||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aaaaacaaaaaaaaaaaaaccattgaactcaatgaattggggagttgacagtataagtag 119

                                                                       
Query: 264 tgttaaatttaaccctattgagatttatttatttatttatttatttgcgaagttaggctt 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tgttaaatttaaccctattgagatttatttatttatttatttatttgcgaagttaggctt 59

                   
Query: 324 ttggtagt 331
           ||||||||
Sbjct: 58  ttggtagt 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)