BAC Information

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BAC

Clone NameMSMg01-198G22
ChromosomeX (Build37)
Map Location 19,748,779 - 19,749,086
singlet/doubletsinglet
Overlap geneSlc9a7
Upstream geneLOC100043953, BC049702, LOC675558, LOC668995, LOC385336, Chst7
Downstream geneLOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198G22.T7 (MSMg01no198_g22.b1)MSMg01-198G22.TJ (MSMg01no198_g22.g1)
ACCAG385766AG385767
length718736
length of high quality
(start - end)
312 (46 - 357)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no198_g22.b1 PHD_FILE: MSMg01no198_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:39 2005CHROMAT_FILE: MSMg01no198_g22.g1 PHD_FILE: MSMg01no198_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAACAGTTGATGGCTGTTGCATACTTTCTGCCTGCCCATCATA
TTTACCTCCCACCCTTTCCTCTTTTTCGGCCCCGGAAGTCTGACTTACAT
AGGTTCCTTTGCTTTCTGCTTTCCTATTAGATTCATTTATAGTGAATGCT
ACTGGAAGGGGGTTGCAGATATAGGAATCCTGCAGACCAGTTGTACCACT
TCATCAGAAGTTACACCTCCCGTCAGATGGCCTAGTTCCTACAACTTCAG
GGTCTGGTAACTGTTCCTTGCCCTGAAGCCTTCAGGCCTGTGGGTGAAAG
TACCCTGTTTTTCTTCCCNAAGCANTGCCCTCCCTTCTAGTTTCCCTGTA
CTCTTGCCACACTTTTCTTTTTTAATTTTTAGAGTCTCTGGTTTTGAAGT
ACTCTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCC
AATGCTATACCAAAAGTCCCCCATATCCACCCACCTCCACTCCCCTGCCC
ACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGTGGCATATAA
AGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCA
TTTTTTGATATACATGCCGCTAGAGTCAAGAGCTCCGGTTTATTGGATAG
CTCTTAATGTTGCTCCCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGA
GAAGCACCTGAAAAAAATGTTCAGCATCCTTAATCAACAGAGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTAGAGAAAGAGGAA
CACTCCTCCATGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCAGTTCTTCAGAAAACTGGTATATAGTACTACAAGAGGATCC
TGCAATACCTCTCTTTGACTCATCNNNACAAGACCGTTCCAACCGGTAAG
AAGGACACATGCTCCACTATGTTCATAGAAAACAAATTTATAATAGCCAG
ACCTGGAAAGAACCCAGATGCCCCTCAACAGTGGAATGAATACCGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAAATTCTTAGCCAAATGGATGGACCTGGAGGGTATCATCCTGAG
TGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTT
GCTAAACACATGAAACTCAAGAAGAACGAAGACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_g22.b1 MSMg01no198_g22.b1 CHROMAT_FILE:
MSMg01no198_g22.b1 PHD_FILE: MSMg01no198_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:39 2005
         (312 letters)



>mm_chrX_19748575_19749286
          Length = 712

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaacagttgatggctgttgcatactttctgcctgcccatcatatttacctcc 64
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 512 gaattcttcaacagttgatggctgttgcatactttttgcctgcccatcatatttacctgc 453

                                                                       
Query: 65  caccctttcctctttttcggccccggaagtctgacttacataggttcctttgctttctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caccctttcctctttttcggccccggaagtctgacttacataggttcctttgctttctgc 393

                                                                       
Query: 125 tttcctattagattcatttatagtgaatgctactggaagggggttgcagatataggaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttcctattagattcatttatagtgaatgctactggaagggggttgcagatataggaatc 333

                                                                       
Query: 185 ctgcagaccagttgtaccacttcatcagaagttacacctcccgtcagatggcctagttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctgcagaccagttgtaccacttcatcagaagttacacctcccgtcagatggcctagttcc 273

                                                                       
Query: 245 tacaacttcagggtctggtaactgttccttgccctgaagccttcaggcctgtgggtgaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tacaacttcagggtctggtaactgttccttgccctgaagccttcaggcctgtgggtgaaa 213

                   
Query: 305 gtaccctg 312
           ||||||||
Sbjct: 212 gtaccctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)