BAC Information

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BAC

Clone NameMSMg01-198G23
ChromosomeX (Build37)
Map Location 161,101,630 - 161,101,939
singlet/doubletsinglet
Overlap genenone
Upstream gene1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
Downstream geneMospd2, Fancb, LOC627045, Glra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198G23.T7 (MSMg01no198_g23.b1)MSMg01-198G23.TJ (MSMg01no198_g23.g1)
ACCAG385768AG385769
length724744
length of high quality
(start - end)
318 (37 - 354)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no198_g23.b1 PHD_FILE: MSMg01no198_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:40 2005CHROMAT_FILE: MSMg01no198_g23.g1 PHD_FILE: MSMg01no198_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
TGCCAAATGGGTAAATTGTATGGTGTGTAAATTCTATTTCAATAAAGTTG
TTATGCCATTTTACAAATGAGTATTTCAGTAGCTGTTTATTGAGTGCCTA
CCAAAAACGAAATAACATCCATATGATGGATTACTTAGAAATCAAATCAC
AAAGTAATATAAATTTTAGAAACATATTTTATAAAATTAAACATCAAGTA
ACTCCCTAAAAATGTATTTATGTTTGTGTGAGCATATACAATTTATACAC
ATTGCTTTTAAAAGAGTAGAGATCAGAGGAGAAAATGGATGATGAATTTT
TAAAATTATTTTCTTGCCACCTTATATGCTTAAGATAAACAACTTATACC
TTCATTTTTAAAACTATAAAATGTGGAGGATGGAGGGATGGCCAACCAAT
TAAGAGCCCTGGATGCTCTCCCAGAGGAACAATATTTGATTCCCAGCACC
CATATGGCAGCTCACAACCATTTGTAACCCCAATTCCATGGGATCTGATG
CCCTCTTCAGAACTGCAAAGGCATCAGGCATGGAAGTAGTATGCAGACAA
AACACTATATACATAAAATAAATGAAAATGACATATGTAAAAAACGAAGA
AGTGTTTTTACACTGGAACCCCCTTGCAAGCATAACTGCTTAGTGCTTCT
CTGGCCTCTGGCCTATGATGAGGC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATATTGCTATATTACTGGAATG
GTGGATTACAAAAATCCAAATATAGGTTTTAATTTTCATTCACTATCAAA
ATAAAATATTGAATCAATTCATTTAATCCTGACTATATATCCAGAAGATT
ATATTGTTAGCTCCATTATACAGATGAGGAATCTGGACGTGAGTGCCTGA
ATACTTTAATGAATGCCAGGCAGTGAGTGGCACGGCTGAAATCCATACCC
AGGATGTTTTACAGCCTAACTACTTGACTGTGATTTTATACTGTCTTTGT
ACCTTTCTATGGTTCTAGTTCTTTCCGGCCACCCCCCCAACCATCTAGTT
TCCCATTTTTCGGTCAGCCAATCTATTCATCCATCCAAATATATATCTAT
GCAACCATACATTATTTTATTCCAGTGAAGGAGTTCAAGACACTTACACC
GGAATAAGACAGTATCCTCGTACTATCAAAAGCTCTCTGAGAGATACCAT
ATTTAAAGAAAAGACAATGTTTAAAAGGAACTTGAAATATCAATATGATT
CTAAAGCACAGAGTGAATTATAGAACATGAAAGGGAAATTTTCTGCAAAA
TACTCGCCAATATATATATACTTATATTATCCCGCCCTACTCTACTATAT
ACTGCAAGCTTCTATATACTATATTTCTATAGATTATTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_g23.b1 MSMg01no198_g23.b1 CHROMAT_FILE:
MSMg01no198_g23.b1 PHD_FILE: MSMg01no198_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:40 2005
         (318 letters)



>mm_chrX_161101225_161101942
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatgccaaatgggtaaattgtatggtgtgtaaattctatttcaataaagttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattctttatgccaaatgggtaaattgtatggtgtgtaaattctatttcaataaagttg 656

                                                                       
Query: 65  ttatgccattttacaaatgagtatttcagtagctgtttattgagtgcctaccaaaaacga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttatgccattttacaaatgagtatttcagtagctgtttattgagtgcctaccaaaaacga 596

                                                                       
Query: 125 aataacatccatatgatggattacttagaaatcaaatcacaaagtaatataaattttaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aataacatccatatgatggattacttagaaatcaaatcacaaagtaatataaattttaga 536

                                                                       
Query: 185 aacatattttataaaattaaacatcaagtaactccctaaaaatgtatttatgtttgtgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aacatattttataaaattaaacatcaagtaactccctaaaaatgtatttatgtttgtgtg 476

                                                                       
Query: 245 agcatatacaatttatacacattgcttttaaaagagtagagatcagaggagaaaatggat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agcatatacaatttatacacattgcttttaaaagagtagagatcagaggagaaaatggat 416

                     
Query: 305 gatgaatttt 314
           ||||||||||
Sbjct: 415 gatgaatttt 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)