BAC Information

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BAC

Clone NameMSMg01-201I02
ChromosomeX (Build37)
Map Location 135,760,390 - 135,761,085
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rapl2, Nrk, Serpina7, 4930513O06Rik, 4933428M09Rik
Downstream geneMum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201I02.T7 (MSMg01no201_i02.b1)MSMg01-201I02.TJ (MSMg01no201_i02.g1)
ACCAG387045AG387046
length1,2001,174
length of high quality
(start - end)		702 (87 - 788)---
definitionCHROMAT_FILE: MSMg01no201_i02.b1 PHD_FILE: MSMg01no201_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:43 2005CHROMAT_FILE: MSMg01no201_i02.g1 PHD_FILE: MSMg01no201_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATTCCNNNNNNTATCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATCAATCAATCAACCCCTTTAGAGTTGACTGGATTTCT
ATACAACAAAGATTTAACGCTTAAGTTTTAAAACTCCATGTATCACCCTA
TTTTAAAAATACAAGAAGCAGGGCTGGGAGACACTTTTGTTCACGAAGTA
CTTGCATTTGCAAGCACTAAGGTCTGAATCGGATCCCTATGACCCATATT
TTAAAAAGCAGATGTTGTGGTTTGTGTTTGTAATCCAGTACTTGGATGGC
AGAGACAAACGGACTCCCCCAGAGATTGCTGGCTAGCCACGCTTGCCCAT
TTGGCAAGTTTCAGGCCAAGGAGAGACTCCATCTCAAAAAAAAAAAAAAT
CTAAGTGTTAATCTAAAAGTGTGTTGGAAACTTTAATATACTGATGCAAA
TAATTAAGTATATAAATAAACATGGATATATACCATATGAACTGACAGAA
ATACTAATTTTAGGGTATAACATTCTCCATACATATCTATTGTCACTATA
ACTTAAATAAAAATTCCAGCAGGCTTTTTGTAGAAGTTGAAAGAATAACT
CTGAAATATGTTTGGAGAAGTAGAGGAGCCAGAATGATACTGAAAAGGAA
GTAGAAATGGCAGAAGACTCACATTATCTGATTTCAAGACTATGATAATC
AAGATTATATATTATTGATGTATGATTGACATATAGGTCAACAGATCACA
AATAAACTAGTAAATATTTCCTACCAATTTTTGAAAAGTTCTTTTCAATA
AATGGTACTGGAACATTTTAAGCAAAATTTTCTATCATGACCCCCTTAGC
TAAGACTTTATACAAAAATCATTCAAAATACATCATGAGCTAGTTTCTAT
AAAATCATATCCTATATCTATAAAGCCCAATATATTACATATTAGGAGAA
TGTCCTTTAAATCTTGGTAGAACCCAAGGTTTATTTATTAAACAAAGCTT
GCAAAATATCTTTTTTTGTTAATAAATTGGTAAATTCTCCCTTGTAATTT
TTTTTCCAAACATATTGTAAATATTGCTTTTTTTTTGGAAAAAAAATGCG
CTTTGTTCTCCCCCAAAAAACTAAATTGTTCTTTAAAATTTTCTAAAAAT
ACCTCTTCCCCTCTATTAATTAAATCCCTCCTCTTTACTTCTTACATCTA


CCGGCTTTNNAAAAAGATGTGACCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATCAGGCCCCCCGNTGNNNNNANGA
NNCNGNGANNNNGCCTTTAAAACCCCCAGAGNNNNNAGGAGNCCCGCNGC
CNCNGGGANCCNAAAANCCNGGNGNGACCAAGCNCCCGGGAANCGGGGAN
CCGGGACCGGNNAAAGCACCGGGGAGNNGAGCGNCCNCGGGGNANGGNAG
GANNNGGNGNGGAGCNAGCACCCAAGGNCGGAACAGGGCACGGGNGCAGA
CGGGAAGGAACCCAGGACACNGGNAGGGGGGGGGNNCCNNCANCACGGGA
NCNNCAGNAANNCCAGNAACCCCGGGGGNNGGGGAAGAAGNNGNGGCCNC
CTTTTTTTTTANCCNGGGNGNGNNAGAGCNCCNGGGAGNGCAAAACCCAC
CCCCCATTGNGGCCCCCCCCGCAGNGCNANGANCCNGNGCAGGAAAAAGA
AACAGGGAGNCCAGCNACCCCGGGAAANCGAGGGANCGGACGAACAGCCA
GCGCACACGGACGGCCCAGGAGAACCGCAAAACACCACCAAGAGAGCACA
GACACGAACCCGAAAGAACACCAGAAGCACGACCAGGAAGAAGCAAAAAA
CACAAAGACGCACACAAACAGCACGCAACCACCCCCGCAGGAACCACCCA
GACGGAAGCGAAGACAAAGAACCAGCCACCACCACCACGCGACGACCCCN
CAGGCACAAAGGCAGCGGACACNACAAAACCACCACACAACAGACAACAC
GGCACAACAAAGGGACAAGCGCGGAAACACAAGGAACAACACAACAAAGA
CAGAGACAAGACACCAACACAAAAGAAAACGAAGCGACCACGAAGAACAG
NGCACAACACGAGGAGGACGCCAGCCACGACACCCAAGACGACAAGCAGA
ACGACAAAACAAGCGCACCAAACCCACCAGGAAAAGGGAGAAAGACAGCA
CACCCGCACCAACCCCCACCACGCACGGCAAACACACGAGGCAAACAACA
GACACCGAGCAAACAGCAACGGAAAAAACAAAGACGAACAAAGAGCAAAG
CCCAACAAACAAACAACACAGCAACAGCACAAAAGCCGCCGAGGAGCGGG
GAAAACAAAGCAGACAGCAACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_i02.b1 MSMg01no201_i02.b1 CHROMAT_FILE:
MSMg01no201_i02.b1 PHD_FILE: MSMg01no201_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:43 2005
         (702 letters)



>mm_chrX_135760149_135761249
          Length = 1101

 Score = 1265 bits (654), Expect = 0.0
 Identities = 688/702 (98%), Gaps = 6/702 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgactggatttctatacaacaaagatttaacgcttaagttttaaaactccatgtatcac 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 937 ttgactggatttctatacaacaaagatttaaagcttaagttttaaaactccatgtatcat 878

                                                                       
Query: 61  cctattttaaaaatacaagaagcagggctgggagacacttttgttcacgaagtacttgca 120
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 877 tttattttaaaaatacaagaagcaaggctgggagacacttttgttcacgaagtacttgca 818

                                                                       
Query: 121 tttgcaagcactaaggtctgaatcggatccctatgacccatattttaaaaagcagatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tttgcaagcactaaggtctgaatcggatccctatgacccatattttaaaaagcagatgtt 758

                                                                       
Query: 181 gtggtttgtgtttgtaatccagtacttggatggcagagacaaacggactcccccagagat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 757 gtggtttgtgtttgtaatccagtacttggatggcagagacaaacggactcccccagagct 698

                                                                       
Query: 241 tgctggctagccacgcttgcccatttggcaagtttcaggccaaggagagactccatctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 697 tgctggctagccacgcttgcccatttggcaagtttcaggccaaggagagactccatctc- 639

                                                                       
Query: 301 aaaaaaaaaaaaatctaagtgttaatctaaaagtgtgttggaaactttaatatactgatg 360
               ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 638 ----aaaaaaaaatctaagtgttaa-caaaaagtgtgttggaaactttaatatactgatg 584

                                                                       
Query: 361 caaataattaagtatataaataaacatggatatataccatatgaactgacagaaatacta 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 583 caaataattaagtatataaataaacaaggatatataccatatgaactgacagaaatacta 524

                                                                       
Query: 421 attttagggtataacattctccatacatatctattgtcactataacttaaataaaaattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 attttagggtataacattctccatacatatctattgtcactataacttaaataaaaattc 464

                                                                       
Query: 481 cagcaggctttttgtagaagttgaaagaataactctgaaatatgtttggagaagtagagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cagcaggctttttgtagaagttgaaagaataactctgaaatatgtttggagaagtagagg 404

                                                                       
Query: 541 agccagaatgatactgaaaaggaagtagaaatggcagaagactcacattatctgatttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agccagaatgatactgaaaaggaagtagaaatggcagaagactcacattatctgatttca 344

                                                                       
Query: 601 agactatgataatcaagattatatattattgatgtatgattgacatataggtcaacagat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agactatgataatcaagattatatattattgatgtatgattgacatataggtcaacagat 284

                                                     
Query: 661 cacaaataaactagtaaatatttcctaccaatttttgaaaag 702
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cacaaataaactagtaaatatttcctaccaatttttgaaaag 242


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1101
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1091
Effective search space:   754972
Effective search space used:   754972
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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