Query= MSMg01no201_l03.b1 MSMg01no201_l03.b1 CHROMAT_FILE:
MSMg01no201_l03.b1 PHD_FILE: MSMg01no201_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:06 2005
(674 letters)
>mm_chrX_66377216_66378289
Length = 1074
Score = 1249 bits (646), Expect = 0.0
Identities = 664/672 (98%), Gaps = 5/672 (0%)
Strand = Plus / Minus
Query: 5 gaattcaggtttc---taccattaatcctattacaatagtgttgagagatgggcccaaat 61
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 gaattcaggtttcgaaaa--attaatcctattacaatagtgttgagagatgggcccaaat 887
Query: 62 gagaggtgtttagataatgaaggtagaaaagccatggattaatgcctatataaaaagtgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gagaggtgtttagataatgaaggtagaaaagccatggattaatgcctatataaaaagtgc 827
Query: 122 tcatgtaactgggtttgccctattatttttgctcctctatcttctgccttctgttagcaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tcatgtaactgggtttgccctattatttttgctcctctatcttctgccttctgttagcaa 767
Query: 182 aggacagacaagatgttcatttcttggtattgcacattctagcctccaaaattgtgagct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aggacagacaagatgttcatttcttggtattgcacattctagcctccaaaattgtgagct 707
Query: 242 aatacatttctatgttaccaaatcttaggaattttatcacaataattcagaacagtctaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aatacatttctatgttaccaaatcttaggaattttatcacaataattcagaacagtctaa 647
Query: 302 gacaaaccacgtatgaatttgttctatcttgaaaggtatagtgatctttctgcctattgt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gacaaaccacgtatgaatttgttctatcttgaaaggtatagtgatctttctgcctattgt 587
Query: 362 tatgcttacacaaaatactatggatttcatgttaggacacctctgcaattgatagtttga 421
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tatgcttacagaaaatactatggatttcatgttaggacacctctgcaattgatagtttga 527
Query: 422 atatacgggtattttgtataacagaagacaaaaacaactgcctataacctctgggtctag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atatacgggtattttgtataacagaagacaaaaacaactgcctataacctctgggtctag 467
Query: 482 tatactggattagacaccattgcatacactagcaagcgttggctgaaaggaccctgatat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tatactggattagacaccattgcatacactagcaagcgttggctgaaaggaccctgatat 407
Query: 542 agctgtctcttctgagtctaggccggggcctagcaaacacataagtggatgctcacagtc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agctgtctcttctgagtctaggccggggcctagcaaacacataagtggatgctcacagtc 347
Query: 602 agctattggatggagcacagggcccccaatggaggagctagagaaagtatccaagaagct 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 346 agctattggatggagcacagggcccccaatggaggagctagagaaagtatccaaggagct 287
Query: 662 aaagagatctgc 673
||||||||||||
Sbjct: 286 aaagagatctgc 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no201_l03.g1 MSMg01no201_l03.g1 CHROMAT_FILE:
MSMg01no201_l03.g1 PHD_FILE: MSMg01no201_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:06 2005
(532 letters)
>mm_chrX_66298234_66299165
Length = 932
Score = 969 bits (501), Expect = 0.0
Identities = 525/533 (98%), Gaps = 2/533 (0%)
Strand = Plus / Plus
Query: 1 caagaaggcaaggattatgagaattttgttcacatgagaaccctaaaa-cacaggttaat 59
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 caagaaggcaaggattatgagaattttgttcacatgagaaccctaaaagcacaggttaat 260
Query: 60 gtctaacgtatgcaataccttcaataatactgtttattaaatagataaaaccaaggtttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctaacgtatgcaataccttcaataatactgtttattaaatagataaaaccaaggtttt 320
Query: 120 ttataggaattaaagccaagtatagcagttatcaataaagcttctgcccagtggggtcac 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 t-ataggaattaaagccaagtatagcagttatcaataaagcttctgcccagtggggtcac 379
Query: 180 aagaaagcacagttagattctttatagctagggttactgtaatggaaagattaacacaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagaaagcacagttagattctttatagctagggttactgtaatggaaagattaacacaga 439
Query: 240 ctgaaatatttgtgagttgcctcaacaagacaaatgcttaggaattccatttattacatc 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 ctgaaatatttgtgagttgcctcaacaagacaaatgcttaggaattccacttattacatc 499
Query: 300 cataggcctttattaattaatttactcattctactcatgtttcaccctgtgtagttaatg 359
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 500 cataggcctttattaattaatttactcattctactcatgttttaatctgtgtagttaatg 559
Query: 360 gaatgtattaataacgcagctactaagactccaaagataaataaacaagaacagatatac 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaatgtattaataacacagctactaagactccaaagataaataaacaagaacagatatac 619
Query: 420 tttgcatataagctgatactgtgcatatgtgtatatatcaatatatgtttttgtaataaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttgcatataagctgatactgtgcatatgtgtatatatcaatatatgtttttgtaataaa 679
Query: 480 tacagcagagtagtgctttgaaaaagttaaacccagtgtaggggaatcgaggg 532
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tacagcagattagtgctttgaaaaagttaaacccagtgtaggggaatcgaggg 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
