CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATCATTTACCATATGGGTTTTGGGATGACACTCAAATTTTGAAT
TTTACTCTGCCTGAGATGGACATTACATTTCTAGTAAGTTCCTCTGGAGA
TACATGCCACTGAGGCTGCTTGTCTGAGGTCATATTTTGAGGTCCACTGT
TAGACAAGATTGGGAGCATTCAGGGTAGCATGGCCATAGACCAAATAAAT
ACTCTACCAAGATAATATGGCTGTATTTTCATTTGTAAAACTATTTTAGA
TTTTTTGTTTAATTGTCTAAAATAATAATAATAATTCTGTGTTAATTAGG
TCATAAAAGAGGAAACCACATGCTTAGTGTTCCAATATGGAATTTAATTC
CTGAAATTTCTTACAGACCATGTATCCTTTTCCAAATTACAAATCCTAAC
AAAAATCCACTGATAAATGGAAAAAATGTGGAAAGTACTATAGTAATTCT
CTCATATAATTTAAAACCTAACAGTTAACATGGAGACTATGATTTAAAAG
GAATTGAATTATGTTGAACCAAAAGTAAAAGTGTGCAGCAAAGTTTTTAT
GTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGCTGC
CCTTTTTATTTCTCCCTTTCTCTCATTCTTTTTACCACTATTCGCTTACT
AACCTCTTCACCTCCTCTCCCCTTCG

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTTTGTATCTATTGAGGCCTGTTTTG
TGACCAATTATATGTTCAATCTCTGGAGAAGGTCCCATGAGGTGCTGAGA
AGAAGGTATATCCTTTTGTTTTAGGATAAAATGTTCTGTAGATATCTGTC
AGGTCCATTTGTTTCATAACTTCTGTTAGTTTCACTGTGTCCCTGTTTAG
TTTCTGTTTCCACGATCTGTTCTTTGAAGAAAGTGGTGTGTTGAAGTCTC
CCACTATTATTGTGTGAGGTGCAATGTATGCTTTGAGCTTTACTAAAGTG
TCTCTAATGAATGTGGCTGCCCTTGCATTTGGTGCGTAGATATTCAGAAT
TGAGAGTTCCACTTGGAGGATTTTACCTTTGATGAGTATGAAGTGTCCCT
CCTTGTCTTTTTTGATAACTTTGGGTTGGAAGTCGATTTTATCCGATATT
ACAATGGCTACTCCAGCTTGTTTCTTCAGTCCATTTGCTTGGAAAATTGT
TTTCCAGCCTTTCACTCTGAGGTAGTGTCTGCCTTTTTCCCTGAGATGGG
TTTCCTGTATACCGCACAATGTTTGCTCCTTGCTTGTGTATCCCGTCTGT
TTTTTCTATGCCTCTTTTTTGTGGAACTTGAGTCCTTTGATTTCTATTAG
GTTTTATTTTTCTCTATTTTGCTTTTTTCTTT

Query= MSMg01no202_j04.b1 MSMg01no202_j04.b1 CHROMAT_FILE:
MSMg01no202_j04.b1 PHD_FILE: MSMg01no202_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:26 2005
         (591 letters)



>mm_chrX_161151475_161152465
          Length = 991

 Score = 1009 bits (522), Expect = 0.0
 Identities = 569/586 (97%), Gaps = 4/586 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatcatttaccatatgggttttgggatgacactcaaattttgaattttactctg 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcatttaatatatgggttttgggatgacactcaaattttgaattttactctg 264

                                                                       
Query: 65  cctgagatggacattacatttctagtaagttcctctggagatacatgccactgaggctgc 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgagatggagattacatttctagtaagttcctctggagatacatgccactgaggctgc 324

                                                                       
Query: 125 ttgtctgaggtcatattttgaggtccactgttagacaagattgggagcattcagggtagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtctgaggtcatattttgaggtccactgttagacaagattgggagcattcagggtagc 384

                                                                       
Query: 185 atggccatagaccaaataaatactctaccaagataatatggctgtattttcatttgtaaa 244
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 385 atggccatagaccaaataaatactctacgaagataatatggctgtattttgatttgtaaa 444

                                                                       
Query: 245 actattttagattttttgtttaattgtctaaaataataataataattctgtgttaattag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actattttagattttttgtttaattgtctaaaataataataataattctgtgttaattag 504

                                                                       
Query: 305 gtcataaaagaggaaacca--catgcttagtgttccaatatggaatttaattcctgaaat 362
            ||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||
Sbjct: 505 atcataaaagaggaaaccataca--cttagtgttccaatatggaatttaattcctgaaat 562

                                                                       
Query: 363 ttcttacagaccatgtatccttttccaaattacaaatcctaacaaaaatccactgataaa 422
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcttacagaccatgtatgcttttccaaattacaaatcctaacaaaaatccactgataaa 622

                                                                       
Query: 423 tggaaaaaatgtggaaagtactatagtaattctctcatataatttaaaacctaacagtta 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggaaaaaatgtggaaagtactatagtaattctctcatataatttaaaacctaacagtta 682

                                                                       
Query: 483 acatggagactatgatttaaaaggaattgaattatgttgaaccaaaagtaaaagtgtgca 542
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 683 acatggagactatgatttaaaaggaattgaattatgttgaaccaaaagcaaaagtgtgca 742

                                                         
Query: 543 gcaaagtttttatgttatgttatgttatgttatgttatgttatgtt 588
           |||||||| ||||||||||||||||| |||| |||| |||| ||||
Sbjct: 743 gcaaagttgttatgttatgttatgttgtgttgtgttgtgttgtgtt 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)