CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGG
AATTCATCAGTGCTTTACTCCAACGGTGTCTTCCTGATCCAGTCGTCTCT
CAAAACCCTGCCATCCGTGCCAGGAGTAACTGTGCATGCCTTTGATCCCG
GCACTCAGGAAGGGAGTAAGGTGGCAGCTCTGAGGTCAACACAGCGACTT
CCAGATCAGCCAGGCTCACAGAGTGAGATTATCTGTCAACAACACAAACA
AAGAACACTTACCACCTAGTATCTAAGCCTTTAATATATGACACTCTTAG
GGATAGTTTTAGATTCAAGCCATGACACCTATCATTACCCCACTCTTCCT
GCCATCGTTTCAATGTCTTCTCCCAAATCCATAAGCTTAATCCTAATGCC
AGTGTTGGCAAGTGGGGCTTGATAGGAACCATTATGTCATCAGACTCCGT
CATCACCAGTGGATTAATGCCACTATGAGAAAGGCTCAAGTGAATAAATT
CCTCGTTGACAAATGAGGACACAGAGTCCAAGACGCTGTTTTGAGAGCAG
AAATACTAAGCTCCAGTCTGCTGCTAACCTGATCCTGGAAGTCCCAGTTT
CCAGAGCCAATGAGAAGAAATTTGTGCTCTTCATAGGTTATCTACTTCAG
CTATTCCTTCTAGCAGCACAAAATAGACTGGTGTTCCTTCAAAGAAGATC
AGTATTATGGATGTGATTGGTCAGATTCCTGGATACTGATTAGATT

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGATATTCCCCAGTTTCTCCTCTA
CCAGCTTCAGTGTATCTGGTTCTATGTTGAAGTCTTTGATCCATTTGGAG
TTTCATTGAAGATGATACACGTGGATCTATTTGCATTCTTCTACATGCAC
CATGAAGTTAGATCAGCTCCATCTGCCGAAGGTGCTCCCTTTTTTCCATT
GTGTATTTCTGGCATTTGTATAAAAATTCAGGTGTCCATTTTGTTTGGGT
CTTCAATTTGACTCAGTTGATCAATGTGTCTGTTTTTGTGTAAGTACAAC
CCTGATTTTATTAATACTGCTTTATAGTACAACTTGAAATGAACATGGTA
ATACTGTTAGCAGTTCTTTTATTACTCAGGAAAGTTAAGTTGTCCTGTTT
TTTTAAATTTGTTTCTTTTTTGTTTTGTTTTCGGTTTTAGTGTATGTGTT
TTTCCATATGAAGGCAAAAAGAACGTCCTTTCAAGTTCTGTGAAGAATTG
TGTTCATAATTTTGATGAATATTGCCTTGCTACTCGTTTTTTGCCTCTTG
TTAAATTAACCTTTTTTCCTACTCATCCTATCTATCTGGCCATATGTTCC
TCAACTTTTTGACCACCATCTTATATTTACTTTTTCCCCCCTACCTCCAT
TCTCCTTATCCCTGCATTCCCCTTCTTCTTCTTTTATCCTCTATATCCGC
TCTTTTTTTATTT

Query= MSMg01no204_i22.b1 MSMg01no204_i22.b1 CHROMAT_FILE:
MSMg01no204_i22.b1 PHD_FILE: MSMg01no204_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:08 2005
         (701 letters)



>mm_chrX_55480472_55481572
          Length = 1101

 Score = 1274 bits (659), Expect = 0.0
 Identities = 686/695 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatcagtgctttactccaacggtgtcttcctgatccagtcgtctctcaaaaccct 66
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gaattcatcagtgcattaatccaacggtgtcttcctgatccagtcgtctctcaaaaccct 660

                                                                       
Query: 67  gccatccgtgccaggagtaactgtgcatgcctttgatcccggcactcaggaagggagtaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 659 gccatccgtgccaggagtaactgtgcatgcctttgatcccggcactcaggaagagagtaa 600

                                                                       
Query: 127 ggtggcagctctgaggtcaacacagcgacttccagatcagccaggctcacagagtgagat 186
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ggtggcagctctgaggccaacacagcgacttccagatcagccaggctcacagagtgagat 540

                                                                       
Query: 187 tatctgtcaacaacacaaacaaagaacacttaccacctagtatctaagcctttaatatat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tatctgtcaacaacacaaacaaagaacacttaccacctagtatctaagcctttaatatat 480

                                                                       
Query: 247 gacactcttagggatagttttagattcaagccatgacacctatcattaccccactcttcc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 479 gacactcttagggatagttttagattcaagccatgacacctatcattaccccactcttct 420

                                                                       
Query: 307 tgccatcgtttcaatgtcttctcccaaatccataagcttaatcctaatgccagtgttggc 366
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 419 tgccatcgtttcaatgtcttctcccaaatccataagcttaatcctaataccagtgttggc 360

                                                                       
Query: 367 aagtggggcttgataggaaccattatgtcatcagactccgtcatcaccagtggattaatg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aagtggggcttgataggaaccattatgtcatcagactccgtcatcaccagtggattaatg 300

                                                                       
Query: 427 ccactatgagaaaggctcaagtgaataaattcctcgttgacaaatgaggacacagagtcc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ccactatgagaaaggctcaagtgaataaattcctcgttgacaaatgaggacacagagtcc 240

                                                                       
Query: 487 aagacgctgttttgagagcagaaatactaagctccagtctgctgctaacctgatcctgga 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aagacgctgttttgagagcagaaatactaagctccagtctgctgctaacctgatcctgga 180

                                                                       
Query: 547 agtcccagtttccagagccaatgagaagaaatttgtgctcttcataggttatctacttca 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 179 agtcccagtttccagagccaatgagaagaaatttgtgctcttcataggttatccacttca 120

                                                                       
Query: 607 gctattccttctagcagcacaaaatagactggtgttccttcaaagaagatcagtattatg 666
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 119 gctattccttctagcagcacaaaataaactggtgttccttcaaagaagatcagtattatg 60

                                              
Query: 667 gatgtgattggtcagattcctggatactgattaga 701
           |||||||||| ||||||||||||||||||||||||
Sbjct: 59  gatgtgattgctcagattcctggatactgattaga 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)