BAC Information

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BAC

Clone NameMSMg01-204J09
ChromosomeX (Build37)
Map Location 49,101,691 - 49,101,978
singlet/doubletsinglet
Overlap genenone
Upstream gene2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356, Hs6st2
Downstream geneUsp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3, Kis2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204J09.T7 (MSMg01no204_j09.b1)MSMg01-204J09.TJ (MSMg01no204_j09.g1)
ACCAG388902AG388903
length730726
length of high quality
(start - end)		373 (46 - 418)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no204_j09.b1 PHD_FILE: MSMg01no204_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:10 2005CHROMAT_FILE: MSMg01no204_j09.g1 PHD_FILE: MSMg01no204_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTCCCTCAATATTATCCCCAATTAGAGCACAAAGAGTATGGCAG
GCATGGGAAGGCAACAACATTGAGTCACTCTCCCTCTTGTTCCAGCTCAC
TGTTAGTGAAGAGGGTCCATACTAGGAGAGAGTGATTGAAAAGAGAAAAT
ACTGGCTTCTTGAGTGCCCTGCTTTAAAAGGAGTGTAAATCTGAGACATG
CAGACTACTTTCCTCGCCTCCAAGCCCTTAGGTATTGAATTAGAGATTGC
AAATGGAGAAAGCCAGGTCATAAAAACAGAGAGCTCCAACGCTCTCTCCA
GATATTTTTTTCTTTCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTT
CTTCCTTCCTTCCTCCCACAACCCCAACCTTCCTTCCTTCCTTCCTTCCT
TCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCAATTTTAATCTTACTGTGTGAATGATTGTTTTGCCCTGTGC
GTGTTCCGCACTTCCAGGTTTCTGTTTGGCTTTTAGCCATTTCCGATGAA
GCCGGCTTCCCCTCTCGCCCTTTACATCCATTACCGTTTTTACCTCTCAT
ATTTTTTTTCCGTATTTCCCATCTTTGCCCTTCTTACATATAAAACCCTT
TTGTACCTATTTTGCTTCATTTTCTCCCAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAATCAAAGTACCCTAGTTGACA
TTTAATCTCTCTAAAAGGAAGTTGAGAGATAAGCCGTCACCTCATTTTCA
TGCTTCAATTGGCTGTGTTGGTAGCATGAGAGGCTACTGCCAGATGGTTT
TATTAGGTGGTTACAGTTCAAGATGTGCATCAGTAACAGATACAGTGTAC
ATCACTCTGGCCCCTCCATTTATGACCCACCATCCTGGTTCATGGCTCAA
TTTTGACTCACCCACTAAGAATATTCCAAAGGTGAAACCACAGAAATGTT
TGTTTCTGTAACTTATTTGTGCGCGCCCCCCCTGGGAAGATGTATAAATC
ACTTATCCATACAAGCCCCCCCCCTCAAAAACAGGTACCCCACACCTACA
TGAAAGCCTGATGTGCATGGTGCAAGACTGGTTATCTGGTGTGTGTCCTC
ACATCTTCCTTTTCTCATTTCCCCTTCTACTTTCCTTACCTCATACTACT
TTCTTCCATTTTCATCCATTTACATTTTCCCTCATTTCTCCATTTTTTTA
GTCCCTCTTTTCTATTTTCTCTCTTCTTCTATTCCTTCCTTCTTCGCCCT
CCTCCTTTTTTATTATATTTTTTTACATCTTTTCCTCCTTACCTTCTTCT
TCTATTTCCTTTCTCATTTTCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_j09.g1 MSMg01no204_j09.g1 CHROMAT_FILE:
MSMg01no204_j09.g1 PHD_FILE: MSMg01no204_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:10 2005
         (288 letters)



>mm_chrX_49101491_49102178
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatcaaagtaccctagttgacatttaatctctctaaaaggaagttgagagataagccg 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 488 agaatcaaagtaccctagttgacatttattctctctaaaaggaagttgagagataagccg 429

                                                                       
Query: 61  tcacctcattttcatgcttcaattggctgtgttggtagcatgagaggctactgccagatg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tcacctcattttcatgcttcagttggctgtgttggtagcatgagaggctactgccggatg 369

                                                                       
Query: 121 gttttattaggtggttacagttcaagatgtgcatcagtaacagatacagtgtacatcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gttttattaggtggttacagttcaagatgtgcatcagtaacagatacagtgtacatcact 309

                                                                       
Query: 181 ctggcccctccatttatgacccaccatcctggttcatggctcaattttgactcacccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctggcccctccatttatgacccaccatcctggttcatggctcaattttgactcacccact 249

                                                           
Query: 241 aagaatattccaaaggtgaaaccacagaaatgtttgtttctgtaactt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aagaatattccaaaggtgaaaccacagaaatgtttgtttctgtaactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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