Query= MSMg01no205_d05.b1 MSMg01no205_d05.b1 CHROMAT_FILE:
MSMg01no205_d05.b1 PHD_FILE: MSMg01no205_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:01 2005
(683 letters)
>mm_chrX_139388120_139389199
Length = 1080
Score = 1253 bits (648), Expect = 0.0
Identities = 670/678 (98%), Gaps = 3/678 (0%)
Strand = Plus / Plus
Query: 6 aatcctccaataattgctataattctcagtaccttcattatattaaataagctgaatatc 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatcctccaataattgatataattctcagtaccttcattatattaaataagctgaatatc 265
Query: 66 aaagcaaactattaattgtgggagaaaaaagtggtttgaactgtttagttctataataac 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaagcaaactattaattgtgggagaaaaaagtggtttgaactgtttagttctataataac 325
Query: 126 tagggtggtttgttttttaaattacataatctttacagcaagtcagtttttttcaacttt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tagggtggtttgttttttaaattacataatctttacagcaagtcagtttttttcaacttt 385
Query: 186 acatttaagacatgggtgtctaaaagaaaaagacacaagacacagaaagcactcagagta 245
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 386 acatttaagacatgggtgtctaaaagaaaaagatacaagacacagaaagcact--gagta 443
Query: 246 tgacataacgatgttctaagtgacttatgctgaatatgtattgatgaatgaaagcacttt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgacataacgatgttctaagtgacttatgctgaatatgtattgatgaatgaaagcacttt 503
Query: 306 gtcactttgtctacgcagcagactcctgcttgtgttgtctcttgtccaggcttcatgaca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtcactttgtctacgcagcagactcctgcttgtgttgtctcttgtccaggcttcatgaca 563
Query: 366 ttcatacattaaaagagctgctgaagcataatgaactgaacaaaagggaagctttagcaa 425
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 564 ttcatgcattaaaagagctgctgaagcataatgaactgaacaaa-gggaagctttagcaa 622
Query: 426 gaaagagggaattcacaggaccattactagctttaagtagtcaattggtagagcatcatt 485
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 623 gaaagagggaattcacaggaccattactagctttaagttgtcaattggtagagcatcatt 682
Query: 486 tcccagtgcctgaatttcaactatcagctaacaggtccgtttcttgctaggttctccata 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcccagtgcctgaatttcaactatcagctaacaggtccgtttcttgctaggttctccata 742
Query: 546 agttcaatctacctttgattggtatccaatgaccactgtctaatgctcattctgacctgt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agttcaatctacctttgattggtatccaatgaccactgtctaatgctcattctgacctgt 802
Query: 606 ttgtttgtttccccgcctagactgtttttcctgtctatgaaattctacccagattggatt 665
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttgtttgtttccccacctagactgtttttcctgtctatgaaattctacccagattggatt 862
Query: 666 ccactttgtctgtaaagc 683
||||||||||||||||||
Sbjct: 863 ccactttgtctgtaaagc 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1080
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1070
Effective search space: 720110
Effective search space used: 720110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_d05.g1 MSMg01no205_d05.g1 CHROMAT_FILE:
MSMg01no205_d05.g1 PHD_FILE: MSMg01no205_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:01 2005
(337 letters)
>mm_chrX_139428058_139428793
Length = 736
Score = 629 bits (325), Expect = 0.0
Identities = 334/337 (99%), Gaps = 1/337 (0%)
Strand = Plus / Minus
Query: 1 tgacctcaatttttgaagacattttatcattaaaaattttctggatgcctcaaatgtatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgacctcaatttttgaagacattttatcattaaaaattttctggatgcctcaaatgtatt 477
Query: 61 ccaaggcttacaacaaaattattcattcgatgaataaacataaattggcatactatatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ccaaggcttacaacaaaattattcattcgatgaataaacataaattggcatactatatgg 417
Query: 121 tggatatcaataaacaatgcacgtgggaatatatgtataagcaatgaataggagtgcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tggatatcaataaacaatgcacgtgggaatatatgtataagcaatgaataggagtgcagg 357
Query: 181 ttttccttggattttctaatagcatattaaaaacacctttaggaacctcatatttttgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttttccttggattttctaatagcatattaaaaacacctttaggaacctcatatttttgaa 297
Query: 241 aaattgcttcttattgtactttattatttcctggaagactgtaataatgagactgactac 300
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 296 aaattgc-tcttattgtactttattatttcctggaagactggaataatgagactgaatac 238
Query: 301 tattgcatgggtttattggctatgtgattatttatag 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 tattgcatgggtttattggctatgtgattatttatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 736
Length adjustment: 9
Effective length of query: 328
Effective length of database: 727
Effective search space: 238456
Effective search space used: 238456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
