BAC Information

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BAC

Clone NameMSMg01-205H24
ChromosomeX (Build37)
Map Location 121,308,356 - 121,308,690
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205H24.T7 (MSMg01no205_h24.b1)MSMg01-205H24.TJ (MSMg01no205_h24.g1)
ACCAG389467AG389468
length709735
length of high quality
(start - end)
184 (113 - 296)341 (75 - 415)
definitionCHROMAT_FILE: MSMg01no205_h24.b1 PHD_FILE: MSMg01no205_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:23 2005CHROMAT_FILE: MSMg01no205_h24.g1 PHD_FILE: MSMg01no205_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:23 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GACTCCTAAATTCCGAGGGGCGCGGAANNCCAGAAGATTTCAATAAGAGA
TAGCACTGAGGCAATGGCACAAGGAAATAACTGGNTGATAGAATGTGTCA
AAGAAAGGCGGAATGATGCAAGCCTTTATTGCTGCATAGCCAAAGGGAAA
CAGAAATCCTTCACAAAAATCAAAGAGAGGAGCCAATAAACACCTTTCAT
CCAGCAAGATCAAAAATTGCTCTTAGAAAACTTTTTAAGTGTACAAAACA
GGCAAAAAAAGTTTCTGTGTCAGTAAAGTAGGATCTTCACTTATAGCTAC
AATTTTATACTTTCTCAGNGNACCAATTTCTATAAAATATGTTCTTCTCC
CGAACCAGCTTGACTAAGTGTTTAATAAACAATCCTGTGCAACCACCCCC
CAGAAAAATAAATGGACATGAGGTGAATTTTCCATGTGTTGCCACTGATG
TGAGCCATTATCCTGTTGTGCTTCAGGAGATTTATATGACCTTCAACAAG
CAATCCAAATATGAAAATGAATAAGAACCCTACTTGCTAACTGCGACAGA
CTACATAATTCTTTAAGGCCATTAGTGCTACATTCAGGAGTCCAACTTTG
TCTGTGCTCTGAATCTAGTCTAAAACAGCTAAATACTGTATTTTTTATTT
GCATCAGTCCTATAAATAGACTACCGTCTTGCCCTCATTCGCTGAACAAC
ATACTGTTC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAATTTAGACAAAGTGTACCTGATG
ACTCCTTGAGCCACTGAGAGTGATCTAAGCTCCACTTCAAGCATGGGGGG
GACAGTGTGAGTCTTCTTGGTGCTGAAGGGATAATTCTGAGGTTTGTGTG
TCAGAAACAGGACTTGGAGGACCCATTGACAGAGTGATAATGTTGATGTA
TCCACAAACAATCTATAAAGGATGCCATCCTTTAGAGGCAGAAAGGTTCA
CACCATGTTGGGGAAAGTAGAAATGCCAAAGACTATTGTATCTGTACAAG
ATCAAGGGTCGATGTGGATAGGAGAGAAGGCCTGAATATTTCATGATTGA
GACTTCCTGGGAAGCTACCCCACACAAATCATGCAGGCCATGCAACAGCT
TAATCAATCTCCAGTGTGCTAGGAGACATTTCCCAGCTAGTTCTCCTGAT
AAATCTGCTGCCTACTTCTAAAAATGGCAAGGCTTTCTCATTTTTGCTGG
TCAGCTTAATGTCTATGTCCTGGGTTCATTAACGTGCTGGCTACTCTTAC
GCTCTGAGACTTCAGGAACCCGGTTCCTGATCCTTGGACAGGGGTAATTA
GGCCAGAGGATCATAATACTAAGCTCTTGCCGCACCTTATATCAAGGGAG
CGTATTTTTTCCCGCCTACATCTGATCTTTTACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_h24.g1 MSMg01no205_h24.g1 CHROMAT_FILE:
MSMg01no205_h24.g1 PHD_FILE: MSMg01no205_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:23 2005
         (341 letters)



>mm_chrX_121308153_121308892
          Length = 740

 Score =  495 bits (256), Expect = e-144
 Identities = 316/336 (94%), Gaps = 1/336 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   atttagacaaagtgtacctgatgactccttgagccactgagagtgatctaagctccactt 63
           |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct: 204 atttagacaaagtgtacctgatgactccttgagccattgagagagatttaagctccactt 263

                                                                       
Query: 64  caagcatgggggggacagtgtgagtcttcttggtgctgaagggataattctgaggtttgt 123
           ||||||| |||| || |||||||||||||||  ||||||||| ||||||||||||||| |
Sbjct: 264 caagcat-ggggagaaagtgtgagtcttcttattgctgaaggaataattctgaggtttct 322

                                                                       
Query: 124 gtgtcagaaacaggacttggaggacccattgacagagtgataatgttgatgtatccacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgtcagaaacaggacttggaggacccattgacagagtgataatgttgatgtatccacaa 382

                                                                       
Query: 184 acaatctataaaggatgccatcctttagaggcagaaaggttcacaccatgttggggaaag 243
           ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 acaatctataaagaatgccatcctttagaggcagaaagattcacaccatgttggggaaag 442

                                                                       
Query: 244 tagaaatgccaaagactattgtatctgtacaagatcaagggtcgatgtggataggagaga 303
           ||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||||| ||
Sbjct: 443 tagaaatgccaaagactcttgtatctgtacaagatcaagggttgatttggagaggagtga 502

                                               
Query: 304 aggcctgaatatttcatgattgagacttcctgggaa 339
           ||||||||||||||||| || ||| |||||||||||
Sbjct: 503 aggcctgaatatttcattatcgaggcttcctgggaa 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 740
Length adjustment: 9
Effective length of query: 332
Effective length of database: 731
Effective search space:   242692
Effective search space used:   242692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)