BAC Information

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BAC

Clone NameMSMg01-205K05
ChromosomeX (Build37)
Map Location 89,728,036 - 89,728,352
singlet/doubletsinglet
Overlap geneMageb18
Upstream geneEG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, EG436259, EG668061
Downstream geneEG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx, Pola1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205K05.T7 (MSMg01no205_k05.b1)MSMg01-205K05.TJ (MSMg01no205_k05.g1)
ACCAG389555AG389556
length733735
length of high quality
(start - end)		321 (45 - 365)591 (77 - 667)
definitionCHROMAT_FILE: MSMg01no205_k05.b1 PHD_FILE: MSMg01no205_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:33 2005CHROMAT_FILE: MSMg01no205_k05.g1 PHD_FILE: MSMg01no205_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGATAGGTGCCTTACTTTCTCATATTACCAAAGTCTCCTCTTCT
TGTGAGGCTAAAAGGCTGATCTGGACAGAATTTCCAATTCTTCTTTATAG
TTACAACATCTTTTGAAGATCACTAAAGACAGCAAGGTAACCATTTGTTC
CTGCTTGCTTTCTAACCTATACTGTAAAAATAAAAAGATTCATGGATAGA
AACTGCAAGCCAAATATAATATCTTTTACACAGATTTAACCACTAAAAGC
AACTCACGTATTAAGCTGAAAATGCAAGGATAAGATGCACTGGCTTAGCC
ACTCATGTTGGCAACATTCTTTAATGCCCACAATTGGGAATCTGAGCATA
TAATAAAGTGACACTGGCCCCCCCTATTCATGTGATCTTCATTCTACTAT
AACATCTGAATTATAGCTTACTTTGAAATTAGTACTTATAAAACAAGCAA
AGGTCTTTTATTATCAAAGTTTAATTGAAAAAGTTTTTTAAGTTTTTAAG
TAAAGATACAGATATTTATGGTTAACATTATACAGGTAAAACAATGGTGT
TTCAGTGGAAATGCTGTCTATCTATAANATGTAAAAGGGTGCCCTGTGGC
CACATGTAGTTATTGAACTTTTGAAATACAGCTATTGAATTGAACTTGTA
ACTTTATAAACTCAATAAAATAAATTTAATTCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGCCT
GAGAAGCACCTGAAAAAATGTTCAGCACCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCATCTCACAACAGTCAGAATGGCTAAGA
TCAAAAATTCAGCTGACAGTAGATGCTGACAAGAATGTGGAATTGCAAGC
TTATACAACCACTCTGGAAATCAGTCTGTCAGATCCTCAGAAAATTGGAC
ATAGTATTACTGGAGGATCCCGCAATACTTCTCCTGGGCATATATCCAGA
AGAGGTCCCAACCGGTAAGAAAGATACATGCTCCACTATGTTCCTAGCAG
CCTTATTTATAATAGCCAGAACCCGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGACC
TGGAGGGCCTCATCCTGAGTGAGGTAACCCAATCACAAAAGAAATCACAC
AATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCC
AAGATATAAGATACAATTTTCTAAACGCATGAAACTCAAGAAGAACAAAG
ACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_k05.b1 MSMg01no205_k05.b1 CHROMAT_FILE:
MSMg01no205_k05.b1 PHD_FILE: MSMg01no205_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:33 2005
         (321 letters)



>mm_chrX_89727832_89728552
          Length = 721

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgataggtgccttactttctcatattaccaaagtctcctcttcttgtgaggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattccatgataggtgccttactttctcatattaccaaagtctcctcttcttgtgaggc 462

                                                                       
Query: 65  taaaaggctgatctggacagaatttccaattcttctttatagttacaacatcttttgaag 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 taaaaggctgatctggaaagaatttccaattcttctttatagttacaacatcttttgaag 402

                                                                       
Query: 125 atcactaaagacagcaaggtaaccatttgttcctgcttgctttctaacctatactgtaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atcactaaagacagcaaggtaaccatttgttcctgcttgctttctaacctatactgtaaa 342

                                                                       
Query: 185 aataaaaagattcatggatagaaactgcaagccaaatataatatcttttacacagattta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aataaaaagattcatggatagaaactgcaagccaaatataatatcttttacacagattta 282

                                                                       
Query: 245 accactaaaagcaactcacgtattaagctgaaaatgcaaggataagatgcactggcttag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 accactaaaagcaactcacgtattaagctgaaaatgcaaggataagatgcactggcttag 222

                            
Query: 305 ccactcatgttggcaac 321
           |||||||||||||||||
Sbjct: 221 ccactcatgttggcaac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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