BAC Information

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BAC

Clone NameMSMg01-205O13
ChromosomeX (Build37)
Map Location 111,052,082 - 111,052,365
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039112, Chm, EG664918, Dach2
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4, Gm1866, EG546361, EG237009, 4930524E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205O13.T7 (MSMg01no205_o13.b1)MSMg01-205O13.TJ (MSMg01no205_o13.g1)
ACCAG389719AG389720
length718716
length of high quality
(start - end)
287 (432 - 718)340 (77 - 416)
definitionCHROMAT_FILE: MSMg01no205_o13.b1 PHD_FILE: MSMg01no205_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:54 2005CHROMAT_FILE: MSMg01no205_o13.g1 PHD_FILE: MSMg01no205_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGAGATAATTATTTTACACACACACTTAAATGCACGTAATTACC
TGTGCTCATGCACATCCATACACAAGTTTACATGTATTCCACAAGAGCAA
TAACTATACAAATATGCATAATTAAATTATGTCAGTGTATTTCGAAAGTC
AGAGAAAATAAGATTAATATAAACAAAATAATTAGGTTTAGTATAATTTT
TGCATGGATATAATATAAACTGTTTTAGTCTTTGAAATTAAATTTATAGT
TTGTTTTTCATTCTTATATAGCTTGAAAATATAATAAAGCCATCTTCAAA
CTTTAAATAGATTATTTTATTTCTCACCCACTATTCCAATACATAATGAA
AACAATGTCATTTAATGCCCCAACATTAAAGACAAAAATCAACATATTTA
ATAAAAAATCAACTGTTTTGTTTATAATACTAATTGTCTTACAAAATCTG
TATGACATATACACAGTTTAGAAATTAATCCTAGTGGTCATTCCTGAGTG
TGTATATGTACTGAGCTTTACTAGTATGGGTTTACTGCATATAAATTAAA
AAATTGTGTACTGTGGGATGATGAGATGACCTAGCAGTTAAGAGCACTTG
TTGCTTGACTAGAGGACCTGAGTTTGATTGTAAGAAGGCATCTCTGAACC
ATGCAACTCCAGTTCCAG
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTGTCA
TGAATGGGTGTTGGATTTTGTCACCTGCTTACTCTGCATCTAACAAGATG
ATCATGTGCGTTTTGTCTTTGAGTTTGTTTATATACTGGATTACGTTGAT
GGATTTCCGTATATTGAACCATCCTTGCATCTCTGGGATGAAACGTACTT
GGTCAGGATGGATGATTGTTTTGATGTGTTCTTGGATTAGGTTAGCATGA
ACTTTATTGAGAATTTTGGCATTGATATTCATAAGGGAAATTGGTCTGAA
GTTTGCTATCTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGTAATTG
TGGCTTCATAGAACGACCCCCCCCACAGTACCTTCTTCTGTTTCTATTTT
GTGGAATAGTTTGTGAAGAACCGGGATTAGATCTTCTTTGAAGGTCTGAT
ATAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTTTTTTCTTTC
TTTTTTTTTCTGGATCTCTTAATATTTATCGCTTATGCTATGCCTTCTAA
TGTCTTTTATTTTTTCTATCTTCCATTCTATTTCTTACTTCTTTTCACTA
TCTTCTCTAATTAATTTTTTTCAACCCTTTATCTTTCCTTTTCCTCTGAT
TTTGTTTTCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_o13.b1 MSMg01no205_o13.b1 CHROMAT_FILE:
MSMg01no205_o13.b1 PHD_FILE: MSMg01no205_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:54 2005
         (287 letters)



>mm_chrX_111051879_111052565
          Length = 687

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaaatcaacatatttaataaaaaatcaactgttttgtttataatactaattgtcttacaa 63
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaaatcaacttatttaataaaaaatcaactgttttgtttataatactaattgtcttacaa 263

                                                                       
Query: 64  aatctgtatgacatatacacagtttagaaattaatcctagtggtcattcctgagtgtgta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatctgtatgacatatacacagtttagaaattaatcctagtggtcattcctgagtgtgta 323

                                                                       
Query: 124 tatgtactgagctttactagtatgggtttactgcatataaattaaaaaattgtgtactgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 tatgtactgagctttactagtatgggtttactgcatataaattaaaaaattgtgtactgg 383

                                                                       
Query: 184 gggatgatgagatgacctagcagttaagagcacttgttgcttgactagaggacctgagtt 243
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggatgatgagatgacttagcagttaagagcacttgttgcttgactagaggacctgagtt 443

                                                       
Query: 244 tgattgtaagaaggcatctctgaaccatgcaactccagttccag 287
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgattgtaagaaggcatctctgaaccatgcaactccagttccag 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)