BAC Information

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BAC

Clone NameMSMg01-206L15
ChromosomeX (Build37)
Map Location 136,742,301 - 136,742,590
singlet/doubletsinglet
Overlap geneLOC100041446
Upstream geneMum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213
Downstream geneEG245643, LOC666424, Prps1, Tsc22d3, Mid2, LOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961, Col4a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206L15.T7 (MSMg01no206_l15.b1)MSMg01-206L15.TJ (MSMg01no206_l15.g1)
ACCAG390234AG390235
length747747
length of high quality
(start - end)
294 (127 - 420)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no206_l15.b1 PHD_FILE: MSMg01no206_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:59 2005CHROMAT_FILE: MSMg01no206_l15.g1 PHD_FILE: MSMg01no206_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTGAGGCATATCGAATGGCTGAGAAGCACCTAAAGAAATGT
TCAACATCCTTAGTTATCGTGGACCCGCAAATCAAAACAACCCTGAGATT
CCACCTCACACTAGTCAGAATGGCAAAGATCAAAAATTCAGGTGACAACA
GAAGCTGGTGAGGATGTGGAGAGAGAGGAACACGCCTCCATTGCTGGTGG
AATTGAAAGCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAG
AAAACTGGACATAGTACTACCTGAGGACACAGCAATACCACTCCTGGAAA
TATAACCAGAAGTTGCTCCAACATGTAATAAGGATACATGCTCCACTATG
TTCATAGCAGCCTTACCCCACCATATCCAGAAGCTGGAAAGAACACAGAT
GTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTGCATTTACACAATG
GAGTACTACTTAGCTATTAAAGACAATGAATTTGTGAAATCCTTACGCAA
ATGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAATCCAATCACAAA
AGAACACACATGGTATGCACTCACTGATAAGTGGATATTAGCCCAGAAGC
TCGGAATACCCAGGAAACAATTCACAAGCCACATGAACATCAAGAAGGAA
GACCGAAGTGTGGATACTTTGATCTTTCTTACAGGGGGAACAAAATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATAAACTATATCTTTCAGCAT
ACAGACTCTGGAACTTTCCACTCGTCCTCAGGCATAACCCTACTAGCCAA
GTTTATCCTGTCTCCTGGCTTTTAGAGAATAAAGGTATAACTTGGGAGTG
ACTTGATCTGTTGGCCCATGAAAGATACAGAAATTGCCAAGACTGAAAAA
TTTTCAAGGTTTTGGTTTTTTAAGTACATAAGATAGTGGTGTTTAGGGAA
TTGCTTAGAAATTGCCTTGCTATATCTTTGGCAGTTGAATGTATGTAAAT
ATATGCATGTATTTACTGTTTTGTGCACCCCCTCATATTCTTGTTTTTAT
ATTTCTCAAACAATATCCCCCCCGCATGAAGAAAGAATTTCTTGGTGTGC
GTGATATTTCACCATGGTAACTGTGAAAATCAAACAGCAATCTTGAACCA
TTATGTCCTCCGAGACTAACATATGTACTGGTTTACTGTTATCAGACCTC
ATTGTTCCTCATAATTTTGATCATCCTTTTACGTATTATCTTTGACCCCG
ATTTCTCGGCCCATGTTGCTTGACTATTACCTTTCCCTTTAATTTTTCGT
TACTTTTACATTCATATGTTTCTTTTTTTTCATTTTCACATTTTTTTCCT
ATTTTCTCATCTTATCTTTCCCCTCATTCCTTGTATATTTTTAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_l15.g1 MSMg01no206_l15.g1 CHROMAT_FILE:
MSMg01no206_l15.g1 PHD_FILE: MSMg01no206_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:59 2005
         (291 letters)



>mm_chrX_136742101_136742791
          Length = 691

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catataaactatatctttcagcatacagactctggaactttccactcgtcctcaggcata 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||
Sbjct: 201 catataaactatatctttcagcatacagactctggaactttccacacgtattcaggcata 260

                                                                       
Query: 61  accctactagccaagtttatcctgtctcctggcttttagagaataaaggtataacttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accctactagccaagtttatcctgtctcctggcttttagagaataaaggtataacttggg 320

                                                                       
Query: 121 agtgacttgatctgttggcccatgaaagatacagaaattgccaagactgaaaaattttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgacttgatctgttggcccatgaaagatacagaaattgccaagactgaaaaattttca 380

                                                                       
Query: 181 aggttttggttttttaagtacataagatagtggtgtttagggaattgcttagaaattgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggttttggttttttaagtacataagatagtggtgtttagggaattgcttagaaattgcc 440

                                                             
Query: 241 ttgctatatctttggcagttgaatgtatgtaaatatatgcatgtatttac 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctatatctttggcagttgaatgtatgtaaatatatgcatgtatttac 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)