TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGTTTGTCGGCTTCAAGGATTTTCTGACATTGGAACACTGGGGG
AGGCTTAGCTATGTCAAAATTCGATCTTTAAAGGCACTTATAATAAAATA
ATACTAAAAGAGAGCACGTGGATCCATACACCAGACTAATGCGGAGAGAG
GGTATGAGTATATGGGATATGAGAATGCCTGGTTCCAGGAGGTTAAGTTT
CCGTGAAACTCTTTGCCTCGTGAGTGCTTTCAGGCTTCTTGGCCTGTCAA
GCAAACTACACTGGAGTGTGGGTAGCACCAAACCAAATCAAACACTCTTA
CCTGTTTCCAGCATCAAGAGTAGTCTCGTCTTTCTAGATGATATTTTGAC
CCTGTTGAAAAGAGAACCCCCCCCATGGAACACCTATGTATTCTCCTAGG
AAACAGACTCAGGAAGATGGGAAGCTGCAGGCTACTCGTGGTTCTGTACC
AGGTTCCTGGCTAGCCTGTACTACCAAGTGAGTCCCCATCTCACGTTGGA
GGAGGAAGAAGAGGAGAAGTAGAAGACAGGTAGTTTGATCCGCCATGCAC
TTGTTTTTTCTATCTATTGTTCGTTCCTCATACTCCAACTTGCTTGTCCT
TTGATCCACTACTCGTTTTTTAAATACCCCTATCCCCGCTTTTCCCGTAT
TTGTTTTGTTACAACGTTGCCCATTTCCACTTTTTTTGCCCCTTTTCTCC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATACATAAGGTCAATAAGCTTTAAAC
ATAACAAATGCAAATTAAAACATGTCCGGTGCAAGATGTTTGTTGTTGGG
TTGTGCTAGACAATTCATGCTTTGTGACTGCACTGTAGGATTCCCTCCAT
GGCAGATGAGCTGGATGAAAAATCAGCTAAGGTTTGTGTTCCAGCTATAG
TTTGGTTGTCCTTGGTTAAATGTTTGTATCTTGGATTAAGGTTTCAGAGA
GTTCAGTGCCTAGTCACTGGGTCCTATTTTTTTAGCTCAGAAAATGAGAT
GGGATTGTGCTATTTTTTTTTGTCCCCCCCCCCCGCTGGCATATAAGCAA
AGAGAATGCCTGCCCTTCCCCCCCCTCACAAAAAAACCACCTTTTTCCGT
CTGTATACCAAGCCCATGGGAAGGTACTGTTCCCACTCAGGGTGCTTCTC
TCCCATTTACTTCCCCCTCCCTGAAATATATTCTTGCTGGTCATGGTTCC
TATTTCCTCAGTTTTCCTGTTCCTCCCTCCCTATCGATTCTTCTCCTTTG
CCTATCTTGCTCCCTCTTTTTTTTTCTAGCATTTTTTACCCCTTCTCAAA
TCTTATGTCCTCTTGCCCTGCCTTTTTTTTCTCTTCTGCTCCGATTACCC
TCTACTTCCCCCTTCTCTTCTTTACCCTTTCCTTCCCTCTCCCTTTTTTT
TTTCTTATTTCTTCTT

Query= MSMg01no206_p19.b1 MSMg01no206_p19.b1 CHROMAT_FILE:
MSMg01no206_p19.b1 PHD_FILE: MSMg01no206_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:20 2005
         (527 letters)



>mm_chrX_73420321_73421247
          Length = 927

 Score =  957 bits (495), Expect = 0.0
 Identities = 516/523 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagtttgtcggcttcaaggattttctgacattggaacactgggggaggcttag 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagtttgttggcttcaaggattttctgacattggaacactgggggaggcttag 264

                                                                       
Query: 65  ctatgtcaaaattcgatctttaaaggcacttataataaaataatactaaaagagagcacg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctatgtcaaaattcgatctttaaaggcacttataataaaataatactaaaagagagcacg 324

                                                                       
Query: 125 tggatccatacaccagactaatgcggagagagggtatgagtatatgggatatgagaatgc 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 tggatccatacaccagactaatgcggagaaagggtatgagtatatgggatatgagaatgc 384

                                                                       
Query: 185 ctggttccaggaggttaagtttccgtgaaactctttgcctcgtgagtgctttcaggcttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggttccaggaggttaagtttccgtgaaactctttgcctcgtgagtgctttcaggcttc 444

                                                                       
Query: 245 ttggcctgtcaagcaaactacactggagtgtgggtagcaccaaaccaaatcaaacactct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggcctgtcaagcaaactacactggagtgtgggtagcaccaaaccaaatcaaacactct 504

                                                                       
Query: 305 tacctgtttccagcatcaagagtagtctcgtctttctagatgatattttgaccctgttga 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 tacctgtttccagcatcaagagtagtctcgtctttctagatggtattttgaccctgttga 564

                                                                       
Query: 365 aaagagaaccccccccatggaacacctatgtattctcctaggaaacagactcaggaagat 424
           |||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagagaagccagtccatggaacacctatgtattctcctaggaaacagactcaggaagat 624

                                                                       
Query: 425 gggaagctgcaggctactcgtggttctgtaccaggttcctggctagcctgtactaccaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggaagctgcaggctactcgtggttctgtaccaggttcctggctagcctgtactaccaag 684

                                                      
Query: 485 tgagtccccatctcacgttggaggaggaagaagaggagaagta 527
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgagtccccatctcacgttggaggaggaagaagaggagaagta 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)