BAC Information

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BAC

Clone NameMSMg01-207B08
ChromosomeX (Build37)X (Build37)
Map Location 38,619,091 - 38,619,49238,566,404 - 38,566,786
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039769
Downstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207B08.T7 (MSMg01no207_b08.b1)MSMg01-207B08.TJ (MSMg01no207_b08.g1)
ACCAG390450AG390451
length1,1971,196
length of high quality
(start - end)		402 (464 - 865)383 (75 - 457)
definitionCHROMAT_FILE: MSMg01no207_b08.b1 PHD_FILE: MSMg01no207_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:33 2005CHROMAT_FILE: MSMg01no207_b08.g1 PHD_FILE: MSMg01no207_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:33 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,619,091 - 38,619,492)(38,566,404 - 38,566,786)
sequence
NNNGGATCACTGGCGCTATAGACTCCTATGGGAGAGGATCCGCGGAATTC
CAAACTGACTTATATTTGATTAATGAATAATTTTAACATATATCAAGACT
ATAATGTAATATAATTATGCTTTCCCTAAGATAATTGTACAGAATTTACA
GCTTTGCTATTTCATAGTGTAGGACTAGTGTAGGCTGGTAATAAGGCATT
ATTTGGCGTTCCATAATGAATGCTGTCCTCTTTGTCTCTGTGACTATCAC
CTATTGTATCTGAAGCCACTGCAGGTGCTGTAAACACTGAAGAAGGACCC
ATTTGTCCTATTTTTTAAATGAGAGCTAAAAAAGGCTTCTTAGAATTAAC
AGTAATTTTATTTCTGAGAGTGTTAGATTGCTACATGGCTATGAAATTGT
TATATTGTCAAGCATAATGGGAAAACTTTTATGAGACTATATTTTTGCAT
ATTGGTAGAACGCGAATTCATGGGTCATCACAAAATGATTCTGAGTTGAA
TGCAGATGCTGAAGGGAGTAGGATAGCCTAGTTTCTTGCTACTCTATAGT
GTTCTCCATCAACCTGGGATTTTTATCACAGCCTTCATGCTACAACTGCA
AGAAGTAAGCAATACATGTAGATAATGCAGTGTTCGAAAATTTTTTAGGT
TGAAAGGTTTTGTTTCTGTTTTTAACTTTGATTCTTTTCTATTTAATTAT
TTTTGAAAGTTTCATACTTGAATTTTATATTGACATCATTTCACCCCCAC
TTCTCCCCATTCCAAGTTCCCCTGTGTCCTCCTAGTCCTCAAATTTCTAA
CCTTTTCTTCGTTATATATGTATATTTTCATAGATTTACACACACTTATT
ATATATGTCTGGCTTCTTTATGCTCCTCTCAATATTCATTTTTGAATACT
TCAATCAATCCCACATTTCTTCATACCTGACATCTTATGATTTTCTCCTC
CGCTGGTTACTTTTAAATGCCACGTGGAACTATTAAAATTCTGAAAAGGG
GCCTCCCCAAAAAAAAGGAAAATTTTTGATATCTGGAAGGGGCTTTCCAA
TTGTTGGGAAAAAAAAAAAAACGTAACCCATTTTTGTTTTCTAGTTCCTC
AAAAAACTTGGGAAACAAAAAAAAAATTGGTGAAAACATATTTTTTTTGT
TTCCTAATCCAAAAAAACCTTTGGGGGGGTAAAACGCGTTTCTCTTT

NNNNGGTATGAGGCGATGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAGCTGAATGAACCAAAGTAAAGC
TTGTCCTGTTTCCTACTCTGCTTGCTTAACACGATTTAAGTAATTCAGTT
GAAATTAGGTAGCTATGGGTATTTTGTTAAGGGTTTTTTGTTTGTTTGTT
TCAAATATCAAACGCTATGTTAACATGCACAAAACAGGCTAACTAAAATT
AGAGTACTAGCAGACCGCCAACGTAATGTTATCAATAGAAAGTAGTAGAG
ATAATTTTCACATATACCAAAAATACAACTTGACTCAATTGTTGATCTAA
TGGAACATTTGATTTGATGAAGTATGAGCATAATTAATGCCCATATTATG
ATTTTCTTTCAAAGGATAAAATAACAGAATGGAATATATTGTGGTAATGG
TGATATATTCTTTATCACAATACTGAGCATATTACAGGCATTTGGAAATA
ATTGTTGACTGGTTAACATGTCAACATACCTCTTCAAAATTATAGGCAAC
TTTCACATCTCCTCCCACTCCTGTTCTACTATCTCTACAGGGAAAGGCTT
CACCGTATTTAGAAGGAGTGAAAGTAATATTGTGTTTGGTTTACTGTTGT
TGTTCCTAAAAATATTTGATTACCTCTACCTGAGTTCAGCCACTTAGTAT
TTCATATGTCAGCACTTTCTTGTTAAGTTATCTATTAAACTTCATCAAAT
AAAAAACTGGACTTTTTTCTGGAAGAAAACCACCAAGGAATATAATGCCA
GTATTTCATTTCAAGAGAGCCATATTTTACCAGGCCTTTAATAATGTAAC
TATTGCACAATGAATAAAGGTCAGATTTCTATCCCTAATTCACCTTTAGA
TAATGACAGTTTTTTGTTCTTCCCCCCTATGTGGAAACCAATCTTAATCC
TTACAAGAGGTCAATATTTTTGTTAATTTATTGCTTGGATATGAATTAAA
AATGTCACCTTTTCTAAGTCCTTTTTTATGGTCTTTTTTATATATTTTTT
TTTAAAATTCCTCCCTTCTTAAACTTTTTCAATTAACCATGTTTTTGTAG
ATCATTTTCCTCATTTCCTTTTCTCTATCTTCATCTATATTAATTTTCGA
ATTTAATTTTTACACCCCTCTAAATTTTTTCTTCTTTATATACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_b08.b1 MSMg01no207_b08.b1 CHROMAT_FILE:
MSMg01no207_b08.b1 PHD_FILE: MSMg01no207_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:33 2005
         (402 letters)



>mm_chrX_38618891_38619692
          Length = 802

 Score =  770 bits (398), Expect = 0.0
 Identities = 401/402 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcatgggtcatcacaaaatgattctgagttgaatgcagatgctgaagggagtagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcatgggtcatcacaaaatgattctgagttgaatgcagatgctgaagggagtagga 260

                                                                       
Query: 61  tagcctagtttcttgctactctatagtgttctccatcaacctgggatttttatcacagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcctagtttcttgctactctatagtgttctccatcaacctgggatttttatcacagcc 320

                                                                       
Query: 121 ttcatgctacaactgcaagaagtaagcaatacatgtagataatgcagtgttcgaaaattt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttcatgctacaactgcaagaagtaagcaatacatgtagataatgcagtgttcgaaatttt 380

                                                                       
Query: 181 tttaggttgaaaggttttgtttctgtttttaactttgattcttttctatttaattatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaggttgaaaggttttgtttctgtttttaactttgattcttttctatttaattatttt 440

                                                                       
Query: 241 tgaaagtttcatacttgaattttatattgacatcatttcacccccacttctccccattcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaagtttcatacttgaattttatattgacatcatttcacccccacttctccccattcc 500

                                                                       
Query: 301 aagttcccctgtgtcctcctagtcctcaaatttctaaccttttcttcgttatatatgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttcccctgtgtcctcctagtcctcaaatttctaaccttttcttcgttatatatgtat 560

                                                     
Query: 361 attttcatagatttacacacacttattatatatgtctggctt 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttcatagatttacacacacttattatatatgtctggctt 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no207_b08.g1 MSMg01no207_b08.g1 CHROMAT_FILE:
MSMg01no207_b08.g1 PHD_FILE: MSMg01no207_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:33 2005
         (383 letters)



>mm_chrX_38566204_38566986
          Length = 783

 Score =  710 bits (367), Expect = 0.0
 Identities = 379/383 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagctgaatgaaccaaagtaaagcttgtcctgtttcctactctgcttgcttaacacga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 201 ttgagctgaatgaaccaaagtaaagcttgtcctgtttcctactctgcttgcttaatatga 260

                                                                       
Query: 61  tttaagtaattcagttgaaattaggtagctatgggtattttgttaagggttttttgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaagtaattcagttgaaattaggtagctatgggtattttgttaagggttttttgtttg 320

                                                                       
Query: 121 tttgtttcaaatatcaaacgctatgttaacatgcacaaaacaggctaactaaaattagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtttcaaatatcaaacgctatgttaacatgcacaaaacaggctaactaaaattagag 380

                                                                       
Query: 181 tactagcagaccgccaacgtaatgttatcaatagaaagtagtagagataattttcacata 240
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 381 tactagcagaccgccaacgtaatgttatgaatagaaagtagtagagatagttttcacata 440

                                                                       
Query: 241 taccaaaaatacaacttgactcaattgttgatctaatggaacatttgatttgatgaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccaaaaatacaacttgactcaattgttgatctaatggaacatttgatttgatgaagta 500

                                                                       
Query: 301 tgagcataattaatgcccatattatgattttctttcaaaggataaaataacagaatggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagcataattaatgcccatattatgattttctttcaaaggataaaataacagaatggaa 560

                                  
Query: 361 tatattgtggtaatggtgatata 383
           |||||||||||||||||||||||
Sbjct: 561 tatattgtggtaatggtgatata 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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