BAC Information

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BAC

Clone NameMSMg01-208A11
ChromosomeX (Build37)
Map Location 55,097,504 - 55,097,788
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447
Downstream geneZic3, LOC631581, LOC631621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208A11.T7 (MSMg01no208_a11.b1)MSMg01-208A11.TJ (MSMg01no208_a11.g1)
ACCAG391048AG391049
length704693
length of high quality
(start - end)
312 (36 - 347)283 (56 - 338)
definitionCHROMAT_FILE: MSMg01no208_a11.b1 PHD_FILE: MSMg01no208_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:42 2005CHROMAT_FILE: MSMg01no208_a11.g1 PHD_FILE: MSMg01no208_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAAAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC
TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGAC
ATAGTACTATCCGGAGGATCCAGCAATACCTCTCCTGGGCATATATTTAT
TTTATGCCCCACCCCCCCCCCAAGGACATATGCTCCACTATGTTCATAGC
AGCCTTACCCACAATAAACAGAATATGGAAAGAACCTAGATGCCCCTCAA
CAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGCACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGA
CCTGGAGGGCATCATCCTGAGTGAGGCAATACATTCACCAAGAAATTCAC
ACAATATGTATTCACTGATTTGTGGATATTAGCCCCAAACCTAGGATACC
CCAGATATAAGATACAAATTGCTAAACATATGAAACTCATGAAGACTGAT
TACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTGAGGAGGGGACCAGGAGGATGGCAACATTTGAAATGTAAATA
AATAAAATAATTAATTTATAAAAAATGTTGTCCTGGGCTAGTTTCTAACA
GCCTCCTTTTCTCCCAGTGCCTTCAGGACCATCACCACCACTAATACTTC
TATCTCCACTGCCTCTCTTTTTCCTCTCCATCTATAATCATGGGCAAATA
AAATCACTTACTATGTCCAAAATTCTATCTTGCTTCCCACCTTCCTCACC
TTGTACTGCTTCATTCTTAGTTTACCTATTCAATACTGTTTTTTTCTACC
CCCACCCCCCCCAATTATTCAAGCTTGAATCTTTCCTACATCCGGCCCCC
CAAAAAAGAAATTTACTGAGTTTTTGGTCCTGTTTCTATTCTTATTGAAA
CAAAGAATATTGTTTTGAATAGGAATGTTGAATATTTTCATGTTTAGATG
CTTGATATCAAATATCAAAATCAAATAGAACATTCTAACCATAAGACACT
ATTTTAAAAACACTCTGATAAGTGATGGTGGTTATATGCACAGCCTAACG
AGAGCTTTGCTTTGAAAGATTTAAGGGGTGCTTATGAAGCAAAACCCTTT
TCTCGTTGGAGTATATGGCATATGGTCCAGGTAAATAAATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_a11.g1 MSMg01no208_a11.g1 CHROMAT_FILE:
MSMg01no208_a11.g1 PHD_FILE: MSMg01no208_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:42 2005
         (283 letters)



>mm_chrX_55097304_55097988
          Length = 685

 Score =  485 bits (251), Expect = e-142
 Identities = 276/285 (96%), Gaps = 2/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgaggaggggaccaggaggatggcaacatttgaaatgtaaataaataaaataattaat 60
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgaggaagggaacaggaggatggcaacatttgaaatgtaaataaataaaataattaat 260

                                                                       
Query: 61  ttataaaaaatgttgtcctgggctagtttctaacagcctccttttctcccagtgccttca 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ttataaaaaatgttgtcctgggctagtttctaacagtctccttttctcccagtgccttca 320

                                                                       
Query: 121 ggaccatcaccaccactaatacttctatctccactgcctctctttttcctctccatctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaccatcaccaccactaatacttctatctccactgcctctctttttcctctccatctat 380

                                                                       
Query: 181 aatcatgggcaaataaaatcacttactatgtccaaaattctatcttgcttcccaccttcc 240
           |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcatgggcaattaagaccacttactatgtccaaaattctatcttgcttcccaccttcc 440

                                                        
Query: 241 tcaccttgtactgcttcattct--tagtttacctattcaatactg 283
           ||||| ||||||||||||||||  |||||||||||||||||||||
Sbjct: 441 tcaccctgtactgcttcattctcttagtttacctattcaatactg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 685
Length adjustment: 9
Effective length of query: 274
Effective length of database: 676
Effective search space:   185224
Effective search space used:   185224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)