BAC Information

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BAC

Clone NameMSMg01-208J03
ChromosomeX (Build37)
Map Location 116,359,715 - 116,360,000
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039551, Tgifx1, LOC665087
Downstream geneLOC385417, Pabpc5, LOC236983, LOC674318, EG545741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208J03.T7 (MSMg01no208_j03.b1)MSMg01-208J03.TJ (MSMg01no208_j03.g1)
ACCAG391409AG391410
length758706
length of high quality
(start - end)
183 (45 - 227)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no208_j03.b1 PHD_FILE: MSMg01no208_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:25 2005CHROMAT_FILE: MSMg01no208_j03.g1 PHD_FILE: MSMg01no208_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCGAGTATCCTTTAATTTGGAGCATAGGTGTTCAGAATTGAGAGTTC
TTGGTAGATTTTTCCTTTGATGAGTATGAAGTGTCATTCCTTATCTTTTT
TGATGATTTTTGGTTGAAAGTCGATTTTATCTGATATTAGACTGGCTACT
CCTACTTGTTTCTTGGGACCATTNNTACTTGNGNANNAAATTGGTTTNNN
TCATTTTTTCCAATTCTCAGNCCATTCCNATGGGACCTAAAGAACCAAGG
GGTTGGGCCCCATTTTCCCCCCTTTTCTTTTTCAAAAAAAAACTTTGGGA
TTTTCCAAAAGGAAGGGCCCTTTTAAAAAAAAAAAAAGAGGGGGCCCCCC
AGGGTTTTTTTTTAAATCTCGCCGCCGCCCCTTCCCAAAAAACCCCAAAA
AATATTTTCCCTTTTTTTTTGNCANNNNNNGGGNNCCCCCTTNCTAACAT
TNNCTNNTCTNTTTTNNTTCTNTTAAGGTNNCAAATAGCATTTCNNCTAG
AGGCNNNNANNATTTGCCACTTTCTCCCCTTTNGGGAGGAATAAGAAANN
NNNNNAACCCCCNNCCCCCTAAAATATNTATAANAAAAAGNNNAAAAAAG
AAAAAAAAANNNNCNCCCTCCGCCCCATGCAATGNNNNACNNANGGNNGN
TAGAGNNNNNNNNNNNNNNNTTTGAAGGTGCAGTGTAGTGAGNAGGTTNN
NTAANANN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTGTATATTTTTGCAATGC
AGTATTCAATACAATAATTAGTATTCTATTAATCATCTAAATGTAATGAT
GACAATGACGATACACAAATGATCTAGTGAGGAGGAATTTCTACTTATTA
TAAGAGGAAAAGGGAATCATCATTCAACTAATTATCAATGGTTGCTGCTT
TCCACCAAATCAACTTCATACCAATGAAATGTAAATGTTATTGTTTATTT
TAATGTACTAGAGTATTAGGAATAGTAAATTTACTAAAATGGTTACTTCT
GGGAAAGGTGTGTAGATTAAGAACTGCGATTTCCATAACAAGGAAATTGT
TATAATACAAAACATGCCATTTTGCATATATGAGTTATAGTAATCTTCTC
TAGGTAGAAGAGCCCTGAGAAAATGCATGTGAAATATCTTTTTCATAGAA
ATCATTTGTCACATTCTTCCACACTTACGTATCATTAAAGAAATATATAA
TATTTTGGTAGTGCACAATTCTTGGCTGTACTTATGCTCAGATACTTTAT
TTTGATTAAACAGTAAAAATACTATTCACTTTCAACTATATTGAGTCTTG
TTGATTAATACTCTCTTTGCTTAGAAAATAAAGTAATTCATTCACCATAA
AAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_j03.g1 MSMg01no208_j03.g1 CHROMAT_FILE:
MSMg01no208_j03.g1 PHD_FILE: MSMg01no208_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:25 2005
         (287 letters)



>mm_chrX_116359515_116360201
          Length = 687

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtgtatatttttgcaatgcagtattcaatacaataattagtattctattaatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtgtatatttttgcaatgcagtattcaatacaataattagtattctattaatcat 260

                                                                       
Query: 61  ctaaatgtaatgatgacaatgacgatacacaaatgatctagtgaggaggaatttctactt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ctaaatgtaatgatgacaatgacgatacacaattgatctagtgaggaggaatttctactt 320

                                                                       
Query: 121 attataagaggaaaagggaatcatcattcaactaattatcaatggttgctgctttccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attataagaggaaaagggaatcatcattcaactaattatcaatggttgctgctttccacc 380

                                                                       
Query: 181 aaatcaacttcataccaatgaaatgtaaatgttattgtttattttaatgtactagagtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcaacttcataccaatgaaatgtaaatgttattgtttattttaatgtactagagtat 440

                                                         
Query: 241 taggaatagtaaatttactaaaatggttacttctgggaaaggtgtg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggaatagtaaatttactaaaatggttacttctgggaaaggtgtg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)