BAC Information

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BAC

Clone NameMSMg01-209A05
ChromosomeX (Build37)
Map Location 88,903,545 - 88,903,832
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629471, LOC100041815, Gm44, LOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542
Downstream geneMageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209A05.T7 (MSMg01no209_a05.b1)MSMg01-209A05.TJ (MSMg01no209_a05.g1)
ACCAG391706AG391707
length811722
length of high quality
(start - end)
309 (103 - 411)288 (58 - 345)
definitionCHROMAT_FILE: MSMg01no209_a05.b1 PHD_FILE: MSMg01no209_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:00 2005CHROMAT_FILE: MSMg01no209_a05.g1 PHD_FILE: MSMg01no209_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATACATTCCCTTTCCCAACCCCCTTTCTTTTTATATNNCACACNGNNGG
GNGTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTTGGTAACATGGCCATTTTCACTATGCTAACCATGC
CAATGCATGTGCATGGAATATCTTTCCATCTTTTGGAGTACTATCCTGAT
GCAGCTACAGCCCTAGCCCCTCCACTATCATTCTTAATGATATACAACCT
CTTCTTTGGTCAATGGGAGGGAGCCTCTGTAACTTGGCTTCCTAGTTCTT
TCGACACTACAATACCATGATAGTAGTGCCCTTGCTCCCAAGTATAATCG
AAAAATCCAGGCACATCTTGTATATTTCTTGCCCTTGCTATTTCCCCCCA
AACATCCTGGTTCTTATTATATGCCCACCCCTCACCCCGCCAGGTCACGG
TGTCATGGGTTACTCATTACTTTGCCCCCACCTCTTATATAATAGTACAT
AATTTGAACTGGGAGTATTCCTAAGTGATAGGACATTTTGCTAACTAACA
TGTTCAAGGGCTTGGCTTCCATATTCAGTATTGTATATAACTCTAAACCC
AAACTAAATATTCTTCTTCTTGATAATAATAATGATAGCATTCATCGCAT
AATAATTGGAAAGATTATTTTGGATATTAATATGTGACAAATATCAGCGA
AGCTTCCTCCTTCTTGATATTATTTGTCAGCTAGCAAACTACCAACCTTA
CGTATGAGCTTCTTATAACATCCCCTTTTCTTGTAACATGTCCCTTCCTT
TGGGATTAACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCAGTTTTGCAATAAAATTAAGTTATGCTGCATACCCCCTGAT
TTTTTCAGAGAGAGAGAGGGACAGAGACACAGAGACAGAGACAGAGAGAG
ATAGAGACAGATGATTCAAGTTAGCATCCATTAATGCATTAAGTTGATAA
ATAGATACAAACTCACAGCTGTGCTCTCAAAAATTTAATACCTTGGTCTC
AGGAAATACATAAATATTAAGCCATGGTTTATAGTATTTTCAAAGGTATG
TGGTATATCAACTCTAGCCACAGTTAATCCCAAGATACCAACATAATGTC
AACACACTCCTTAATTCTAGAAAATTATCAATTAGTTCTCAGAAGCCACA
GCGCATAATTATTACACATGACAGGTATATACCCAATATATACATAATAT
TCTGTTTGTCATGATAACAATTTCAATATACTTAAAGACAATGGAATCAC
ATAGAAAATAATAATTTTAATTTTGTAGAGAGTAATAGTTACATAAACAA
TGATACTTGGTCTCCTGAATATGTCCAAAAGAAACAACAACCATTTTTTT
TTTTAAGCTTCATGGTAGCAAAAACCAAAGCAAACCAACCAGGCAAACAT
ACAAAACATTGACAATCCTTAAATCATTTTCCTTGTAGAGACACAGCATT
AATTGAACCTTTTACATGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_a05.g1 MSMg01no209_a05.g1 CHROMAT_FILE:
MSMg01no209_a05.g1 PHD_FILE: MSMg01no209_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:00 2005
         (288 letters)



>mm_chrX_88903345_88904032
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagttttgcaataaaattaagttatgctgcataccccctgattttttcagagagagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagttttgcaataaaattaagttatgctgcataccccctgattttttcagagagagaga 260

                                                                       
Query: 61  gggacagagacacagagacagagacagagagagatagagacagatgattcaagttagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggacagagacacagagacagagacagagagagatagagacagatgattcaagttagcat 320

                                                                       
Query: 121 ccattaatgcattaagttgataaatagatacaaactcacagctgtgctctcaaaaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattaatgcattaagttgataaatagatacaaactcacagctgtgctctcaaaaattta 380

                                                                       
Query: 181 ataccttggtctcaggaaatacataaatattaagccatggtttatagtattttcaaaggt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ataccttggtctcaggaaatacataaatattaagccatggtttatagtattttcaaagtt 440

                                                           
Query: 241 atgtggtatatcaactctagccacagttaatcccaagataccaacata 288
           ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 atgtggtatatcaactctagccacagttaatcccaagctaccaacata 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)