BAC Information

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BAC

Clone NameMSMg01-209E11
ChromosomeX (Build37)
Map Location 73,600,904 - 73,601,196
singlet/doubletsinglet
Overlap genenone
Upstream geneF8, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243, Pls3, LOC635275, EG635295, LOC667537, LOC385472, LOC100041147, EG238829, Magea7
Downstream gene4930428D18Rik, EG544974, 4930468A15Rik, LOC385474, EG436208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209E11.T7 (MSMg01no209_e11.b1)MSMg01-209E11.TJ (MSMg01no209_e11.g1)
ACCAG391863AG391864
length705705
length of high quality
(start - end)
312 (45 - 356)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no209_e11.b1 PHD_FILE: MSMg01no209_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:21 2005CHROMAT_FILE: MSMg01no209_e11.g1 PHD_FILE: MSMg01no209_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATTCCATTGGTCTACTTGTCTGTCGCTATACCATTACCATGCAGT
TTTTTATCACAACTGCTCTGTCATACAGCTCTAGGTTAGGCATGATGATT
CTACCAGAGGTTCTTTTATCATTGAGAAGAGTTTTTGCTATCCTAGGATT
TTTGTTATTCCAGATGAATTTGCAAGTTGCCCTTTCTAATTCATTTAAGA
ACTGAGTGAAATTTTGATAGGGTTTGCATTGAATCTGTAGATTGCTTTTG
GCAAGATAGCCATTTTTACTATATTGGCCCTGTCAATCCATGAGCATGGG
ATATCTTTCCATCTTACCACATCCTTTTTATTTCTTTCTTCAGAGACCTG
AAGTTCTTATCATACAGATCTTTCACTTTCTTAGTTAGAGACACACCAAG
GGAGTTTATATTATTTGCTACTATTGTAAAGGGTGTGGTTTCCCTAATTT
CTTTCTCAGCCTGTTTATCCTTTGTGTAGAGAAAGGGCATTGACTAGTTT
GAGTTAATTTTATATCCAGCTAGTTCACTGAAGCTCTTTATCAGGTGTAG
GAGTTCTCTGGTGGAATTTTTAGGGTCAGTTATATATACTATCATATTAT
CTGCAAATAGTGATATTTTGACCTCTTTCCAACTTCTTATCCTCTTGATC
TCCTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGACTTGGTGGAAAAGTTGCTGT
GCTGAGTCTATTACCCTGATATTTGGAGACTGATTTTGTTGTCTTAAAAA
GAAGTTTATTCCCATGGACACATTTATTACTTAGCAGAAGACTATGATAG
AGAGACAAGAAGTGAGAAAATGGTGGTTTGATGGACCATACTGTCCTGCA
TAGTTTTATGTCAACTTGACACAATCTGAAGTCATTTGAGAGGAGGAAAC
CTCAAAGAAAATGCCTACATAAAATTGGACTGTAGTCAAGGTTTTGAGCA
TTTTCTTAATTAATGACTGATAGGGCCAGGGTAGCTCATTGTGGGTGGGA
CTACTCCGAGCTGGTCATCCTGGGTTCTTTAAGAAAGAAGGCTGAACAAC
AATGGTTAGCAAGCTAGCAATCTGTACCCCTCCACAGCCTCTGTATCATG
TACTGCCTCCAGATTCTTGCCTGATTTGAGGTCCAAAGGCATGCAGTAAT
TTCTTCTAGCACCCTAACCTGTGCACTCCTGAGTGAAGATTCCTCCTTCA
TATACTGGAACACTGCTTTAAATAAAATATACGCTAGTATACCTAGTAGA
AAATTTCTGATATATATACACATATATATATCAGAAATATATATATCTAT
ACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_e11.g1 MSMg01no209_e11.g1 CHROMAT_FILE:
MSMg01no209_e11.g1 PHD_FILE: MSMg01no209_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:22 2005
         (293 letters)



>mm_chrX_73600704_73601396
          Length = 693

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgacttggtggaaaagttgctgtgctgagtctattaccctgatatttggagactga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgacttggtggaaaagttgttgtgctgagtctattaccctgatatttggagactga 260

                                                                       
Query: 61  ttttgttgtcttaaaaagaagtttattcccatggacacatttattacttagcagaagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgttgtcttaaaaagaagtttattcccatggacacatttattacttagcagaagact 320

                                                                       
Query: 121 atgatagagagacaagaagtgagaaaatggtggtttgatggaccatactgtcctgcatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatagagagacaagaagtgagaaaatggtggtttgatggaccatactgtcctgcatag 380

                                                                       
Query: 181 ttttatgtcaacttgacacaatctgaagtcatttgagaggaggaaacctcaaagaaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttatgtcaacttgacacaatctgaagtcatttgagaggaggaaacctcaaagaaaatg 440

                                                                
Query: 241 cctacataaaattggactgtagtcaaggttttgagcattttcttaattaatga 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctacataaaattggactgtagtcaaggttttgagcattttcttaattaatga 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)