BAC Information

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BAC

Clone NameMSMg01-210E05
ChromosomeX (Build37)
Map Location 116,922,818 - 116,923,063
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385417
Downstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210E05.T7 (MSMg01no210_e05.b1)MSMg01-210E05.TJ (MSMg01no210_e05.g1)
ACCAG392448AG392449
length771813
length of high quality
(start - end)
690 (46 - 735)249 (77 - 325)
definitionCHROMAT_FILE: MSMg01no210_e05.b1 PHD_FILE: MSMg01no210_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:43 2005CHROMAT_FILE: MSMg01no210_e05.g1 PHD_FILE: MSMg01no210_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAGCCCAGATCTAAATATAATAAAAGAAATTTAAGGCAAATGAA
TAGCCAATAAAAATTAAATGGAGAAACACTTGAAGCAATCTCACTAAAAT
TGAGAAAAAGACAAGGATGCCCATTCTCCCCATATCTATTCAATATTGTA
CTCAAAGTACTAGCTAGAAAAATAAGACAGCAAAGAGAAGTCAAGGGGAT
ACAAATTGACAAAGAAGAAACAAATGTTTCACTATTTGCAGATGACAAGG
TAGTATACATAAGCAACCCCAAAAATTGTACCAGAGAACTTCTCCAGCTG
ATAAACAACTTCAACAATGTTGCCGAATATAAAATTAACTCAAATAAATC
AGTAGCCTTCCTGTATACAAATGAGAAACAGGTTGAGAAAGAAATTAGAG
AAACAGCTCCCTTCAAAATAGTCACAAATGATATAAAATATCTTGGGGTA
ACTCTAACCAAACAACTGAAATATCTGTGTGACAATAACTTCAAGGCTCT
CAAGAAAAAAAATCAAAGAACTCAGAAAATGGAAAGATCTTCTATGCTCA
TGGATTGGCAGATTTAACATAATAAAAATGGCCATCCTACTGAAGGAAAT
CTATATATTCGATGCAAAAACCCAGAATAGCAAAAAAACAATACCTAACA
ATAAAAGAACAGCTGGAGGAATCACCATCCTGAACTTCAACCTTTACACA
GATTCATAGTGATAAAAATGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTATTGAAGAATATAATAATCA
ACAAAAATTATATATCCAAAGTAAAGAAGAAATTTGAATACATTGAAATA
TTCAAAAACCAAATTTTTATAGCAATTACTTTAAGTCTTCCTTACACTAA
ATAGGCTAACATGAATGTAATAGTGAATAATACATATCACTTAAAGTAAA
ACAACAGTGATAAAAGTGGAGCACAGGGAAATTAAAACAGTATAAATATA
CTTTGATTTATGACACTTTATTTTGTTTTTTGACTTTGANNATGAGTACA
TTAAATAATTGAAATCATTGTAATTGCAGAATACCCCCCNNAAATCTATA
TTTATCNGCTTGCACAAANCAGTCCCAGTGGATCAAGAACATCACAACAA
CTNCNNNNCTAATTTTTTAAAAGAGGGAAATCCTAATTTGGCGGGGTGTG
GGAAACCNNNNNNGNNTTNNNNNNNNNNNNNCCAGNNNNAGGGNTCCAAA
CTTTATTGAGGCNNNAAGNNNAGGGCCCCCCCTTGAAACTGGGAAANTTT
TTTTAAAAAGTAAAAAACCCCAGGGNGCACCNNNNNAAAAACGAAAAAAA
AAAAGGGGGNNNNGNNNGGGGGGGGACTCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGNAACAAGACCAACCGGGGGAAGGNNNNNNNNCCT
NCCAAAAATAAATATCTNNNNTTCTCTCTTTTTTCTCAAAACTTTTCTTC
AGCCGGGGCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_e05.g1 MSMg01no210_e05.g1 CHROMAT_FILE:
MSMg01no210_e05.g1 PHD_FILE: MSMg01no210_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:43 2005
         (249 letters)



>mm_chrX_116922615_116923263
          Length = 649

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   tattgaagaatataataatcaacaaaaattatatatccaaagtaaagaagaaatttgaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tattgaagaatataataatcaacaaaaattatatatccaaagtaaagaagaaatttgaat 263

                                                                       
Query: 64  acattgaaatattcaaaaaccaaatttttatagcaattactttaagtcttccttacacta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acattgaaatattcaaaaaccaaatttttatagcaattactttaagtcttccttacacta 323

                                                                       
Query: 124 aataggctaacatgaatgtaatagtgaataatacatatcacttaaagtaaaacaacagtg 183
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 aataggctaacatgaatgtaatagtgaataatacaaatcacttaaagtaaaacaacagtg 383

                                                                       
Query: 184 ataaaagtggagcacagggaaattaaaacagtataaatatactttgatttatgacacttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataaaagtggagcacagggaaattaaaacagtataaatatactttgatttatgacacttt 443

                 
Query: 244 attttg 249
           ||||||
Sbjct: 444 attttg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)