BAC Information

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BAC

Clone NameMSMg01-211D20
ChromosomeX (Build37)
Map Location 89,449,112 - 89,595,375
singlet/doubletdoublet
Overlap geneMageb18, EG668061
Upstream geneLOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, EG436259
Downstream geneEG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx, Pola1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211D20.T7 (MSMg01no211_d20.b1)MSMg01-211D20.TJ (MSMg01no211_d20.g1)
ACCAG393048AG393049
length735728
length of high quality
(start - end)
319 (46 - 364)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no211_d20.b1 PHD_FILE: MSMg01no211_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:13 2005CHROMAT_FILE: MSMg01no211_d20.g1 PHD_FILE: MSMg01no211_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,449,112 - 89,449,425)(89,595,093 - 89,595,375)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTGGATCCCGAGAGAGATATTTGGATTTCTTGAGTCATTTTA
TTAAATTGTTTCTATTTACATGATTTTTTCCCTGTGAATTTAATTTTATA
ATATTACAAAATCACTTCTGTGCCTCTTAAAATGTTTTCTCTGACTCATC
ATCTCTTTATAGCAAATCGTAAAGTGAGCTACGGGAACAAAGACAGATGT
TATTTTGCTATCTTCTCAAGAAAAGGATGCAGTTGGTTTCTTTCACTCCA
ATTTGTGTTCAGAACTTCCATACAATGTTGGGAATTCCTGCTTGTTGACA
ATTCATGTTAGAGTTCTTTTTTTCCCGCCCACCTCCCCCAAGGCTAAAGA
GAGGTACTGAGGACAAGTTGATGTTCCAATCTAAAACAATATAGAAATAT
TTTTTGAACTTCCATGTATGAAATTAATGTATTAAACCCATTACTACTTA
TTGTGCTTATTTTAGACATCTCAAAGCTAGTATCTGATTTTAATTCAATA
TATTTAAATATATCTGAAATAGTGAAAAGATTATTCTTCATATATCTGTA
TGTTTAAATAAGATAATAATAATGAATAATAGATATATATTCCAAACGTG
AATGCATTTACAAAGTAAGTTACTATTACGTTTGCTGCCCTCTATATGAA
TTCTTCCTCAAAGCCATAATTAAAGAATACCATCC
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGGTATGTTGAGCTCTAGAGGAA
TCTGTCTAGACTTATCTCAGATCAATCTGTGTTAAAGTGAGAGAACTCTA
AGATGGTTTGTTTTGGTATTCTTTGTTGCAAACAGGGCTGATTTATTTTA
TATCATCAAGACTATAATAAATTCCATGGAAACATTTTGTGTGGATCTCT
CCTCATTGATCTGTCTATCAATCTATCTTATCTATATAATCTACATACCT
ATGTCTATTTATCTCTCTCCCTTTTGTGTGTGAGCATTTTGCCAATGGAT
GACTAGGAGCCATTGAATGACCCGGAAACGGGACCCCCATTCTAGTCCTG
GGACATGATACACCCTTGACCACACAAAAAAAAAAACTTGATGCTTTACG
CACAAGGCTTTATTGGCAGAGCTCTGGGCTGACAAGTACCTCAAACAGGA
GGCAGGGGAGTCGACCCTGAGGCTCGTAAGCTAGGGGTTTTTAAAGAAGC
AAAGGGATAGGGGTGCGAGAAATTTCGACAAAGGTATGGGATTGGCTCAT
TCTAACATTATCCGAAAGATTACATGTCAGCAAAAGGGCATCAGGACTTT
GTTCCTGTGGGCTGCGGGCTTATCTTTGTTTACATAGCAACCAGTTGATT
GTTGACTTTACCTAGCATTATGGCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_d20.b1 MSMg01no211_d20.b1 CHROMAT_FILE:
MSMg01no211_d20.b1 PHD_FILE: MSMg01no211_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:13 2005
         (319 letters)



>mm_chrX_89448908_89449626
          Length = 719

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctggatcccgagagagatatttggatttcttgagtcattttattaaattgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttctggatcccgagagagatatttggatttcttgagtcattttattaaattgt 264

                                                                       
Query: 65  ttctatttacatgattttttccctgtgaatttaattttataatattacaaaatcacttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctatttacatgattttttccctgtgaatttaattttataatattacaaaatcacttct 324

                                                                       
Query: 125 gtgcctcttaaaatgttttctctgactcatcatctctttatagcaaatcgtaaagtgagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgcctcttaaaatgttttctctgactcatcatctctttatagcaaatcgtaaagtgagc 384

                                                                       
Query: 185 tacgggaacaaagacagatgttattttgctatcttctcaagaaaaggatgcagttggttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacgggaacaaagacagatgttattttgctatcttctcaagaaaaggatgcagttggttt 444

                                                                       
Query: 245 ctttcactccaatttgtgttcagaacttccatacaatgttgggaattcctgcttgttgac 304
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 ctttcactccaacttgtgttcagaacttccatacaatggtgggaattcctgcttgttgac 504

                         
Query: 305 aattcatgttagag 318
           ||||||||||||||
Sbjct: 505 aattcatgttagag 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no211_d20.g1 MSMg01no211_d20.g1 CHROMAT_FILE:
MSMg01no211_d20.g1 PHD_FILE: MSMg01no211_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:13 2005
         (283 letters)



>mm_chrX_89594993_89595675
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggtatgttgagctctagaggaatctgtctagacttatctcagatcaatctgtgttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatggtatgttgagctctagaggaatctgtctagacttatctcagatcaatctgtgttaa 324

                                                                       
Query: 61  agtgagagaactctaagatggtttgttttggtattctttgttgcaaacagggctgattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtgagagaactctaagatggtttgttttggtattctttgttgcaaacagggctgattta 264

                                                                       
Query: 121 ttttatatcatcaagactataataaattccatggaaacattttgtgtggatctctcctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttttatatcatcaagactataataaattccatggaaacattttgtgtggatctctcctca 204

                                                                       
Query: 181 ttgatctgtctatcaatctatcttatctatataatctacatacctatgtctatttatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttgatctgtctatcaatctatcttatctatataatctacatacctatgtctatttatctc 144

                                                      
Query: 241 tctcccttttgtgtgtgagcattttgccaatggatgactagga 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tctcccttttgtgtgtgagcattttgccaatggatgactagga 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)