XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GCATGCTCCCTTAGCGCCATTCCAGCTTAGACTGTACCACACCTGGCAAC
CTTATGCCTGTTTCTCCTCATGTTCTGGTACAAATTTTCTTTAATTATTT
TCTTCTTCCATGGAGCTCCAAACCAGCAGTGTTCCTTCCCGTGTCCTCTG
CCATTTCCCAGATCCTGCGTGGGACACCAATTTGTTGGTCCAGTCTGCAG
CTCTCATGTCTGGGTTCAAGCCTGGGATGCATCTTGGAACTGAAAGAAAA
GAGGGAATCTAGGCGGGTAAAGAGAGAACCTCCTTTGTCTTTGTGTGTAC
AAAATCCATTATATAGCAAAATTTTATTGGACTATATATATACATGCTAG
GGATATATCACCACCTAATCTAAGACTTGAGTTGAGACAGAAGACATTGT
ATAATAATCATGTCTGGTTATGCATTCACTAAGGTCTATATTTGGAATGA
AAAATTTTTCCATTTTTTAAAATCTTATTTTATATGATATTCACAAATAT
TTTGTCTATATCTATATCTGTGTACTATAAACATGCCTGGTGCCTATTCA
AGTTCAAAGATGGTGTCAGATTACCTGGGATTGTAGTTAAAGACAGATGT
AAGCTGCCACGTGTTGGCTAGAAATCAAACCCCAGATCCTCACCAAGATA
ATCAACTTCCTTTN

AAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAGGACAGCCAGGGATACACAGAGAAACAC
AGTCTTAAAAAAAAAAAAAAAAAAAAAAACAAAAACAAAAACAAAACAAA
ACAAAAAAAAAACAAAAGAAACAAACAAAAAAAAAACAAAAATAACAGAA
AGAAAAGTATTAGAGAAATTTTGGCTTCTTGGGAATTATTTTATATGTCT
ATAGGTTTTTGGAAGGGTTTGTAGAGTTTTTAAAAGAGTGCTTTTCACTA
CTTATCAGATTCACTTTTTTTTTTTGATTTTCACCATCCAACAAAAATAT
GATTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCACGAAGATTTGTGTTTT
TAGATTTTTTTTGTTACCCCCCCCTGTAAAAAAAAAAAAACCTCGCAGTG
TGGTGGGGGAACTCATTACTACTCAGCTAGACCATACCCATAATTTATTC
TTTCGTACCCTCGAAATTTAACACACATGAAACGAGTGTTTCATCCATAT
TCTTTTCCTCTACCTATTTTCTTTTTCCCTCTTACCCCCCTCATTTTGTT
TATGCGTCCCCTTCTAGACCCCCCCCCGCGTTTTCCCTTTTTTTATTAGA
TTCCGCGACCCGTAGACCTACGAAACACAAATATTCATTATTTTTTTCAA
CTTCAATATCGTTGTTTTATGTGTAGGTCCACAGACAACCGTTTATTCTT
TATTATTTCCCCCCGTCTCATTTAATTCTCCTTCCACACATACAN

Query= MSMg01no212_i16.b1 MSMg01no212_i16.b1 CHROMAT_FILE:
MSMg01no212_i16.b1 PHD_FILE: MSMg01no212_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:20 2005
         (672 letters)



>mm_chrX_121157171_121158242
          Length = 1072

 Score = 1197 bits (619), Expect = 0.0
 Identities = 656/671 (97%), Gaps = 6/671 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcatgc---tcccttagcgccattccagcttagactgtaccacacctggcaac 61
           |||||||||||||   |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 gaattcagcatgcaggt---ttagcgccattccagcttagactgtaccacacctggcaac 912

                                                                       
Query: 62  cttatgcctgtttctcctcatgttctggtacaaattttctttaattattttcttcttcca 121
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 cttatgcctgtttcttctcatgttctggtacaaattttctttaattattttcttcttcca 852

                                                                       
Query: 122 tggagctccaaaccagcagtgttccttcccgtgtcctctgccatttcccagatcctgcgt 181
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 851 tggagttccaaaccagcagtgttccttcccgtgtcctctgccatttcccagatcttgcgt 792

                                                                       
Query: 182 gggacaccaatttgttggtccagtctgcagctctcatgtctgggttcaagcctgggatgc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gggacaccaatttgttggtccagtctgcagctctcatgtctgggttcaagcctgggatgc 732

                                                                       
Query: 242 atcttggaactgaaagaaaagagggaatctaggcgggtaaagagagaacctcctttgtct 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atcttggaactgaaagaaaagagggaatctaggcgggtaaagagagaacctcctttgtct 672

                                                                       
Query: 302 ttgtgtgtacaaaatccattatatagcaaaattttattggactatatatatacatgctag 361
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 671 ttgtgtgtacaaaatccattatatagtaaaattttattggactatatatatacatgctag 612

                                                                       
Query: 362 ggatatatcaccacctaatctaagacttgagttgagacagaagacattgtataataatca 421
           |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ggatgtatcactagctaatctaagacttgagttgagacagaagacattgtataataatca 552

                                                                       
Query: 422 tgtctggttatgcattcactaaggtctatatttggaatgaaaaatttttccattttttaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgtctggttatgcattcactaaggtctatatttggaatgaaaaatttttccattttttaa 492

                                                                       
Query: 482 aatcttattttatatgatattcacaaatattttgtctatatctatatctgtgtactataa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aatcttattttatatgatattcacaaatattttgtctatatctatatctgtgtactataa 432

                                                                       
Query: 542 acatgcctggtgcctattcaagttcaaagatggtgtcagattacctgggattgtagttaa 601
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 acatgcctggtgcctattcaagttcaaagatggtgtcagattccctgggattgtagttaa 372

                                                                       
Query: 602 agacagatgtaagctgccacgtgttggctagaaatcaaaccccagatcctcaccaagata 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 371 agacagatgtaagctgccacgtgttggctagaaatcaaaccccagatcctcaccaagaaa 312

                      
Query: 662 atcaacttcct 672
           |||||||||||
Sbjct: 311 atcaacttcct 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)