BAC Information

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BAC

Clone NameMSMg01-212P04
ChromosomeX (Build37)
Map Location 133,262,264 - 133,262,547
singlet/doubletsinglet
Overlap genenone
Upstream geneGprasp1, Gprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196, Kir3dl2, LOC100041079, Kir3dl1, Tceal3, Tceal1
Downstream geneMorf4l2, BC065397, Glra4, LOC100041122, Plp1, Rab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303, Il1rapl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212P04.T7 (MSMg01no212_p04.b1)MSMg01-212P04.TJ (MSMg01no212_p04.g1)
ACCAG394117AG394118
length739740
length of high quality
(start - end)
315 (47 - 361)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no212_p04.b1 PHD_FILE: MSMg01no212_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:51 2005CHROMAT_FILE: MSMg01no212_p04.g1 PHD_FILE: MSMg01no212_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTAGCTCTGAGCCGCATTTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCC
CTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCCGTTTCA
TGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCAC
TTTCTCCTCTATTATTTTCACCCCTCTCTCGCCTTTATGTGAAGTTCCTT
GATCCAATTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTC
GCATTCTTCTACATGATAACCGCCAATTGTGCCAGCACCATTTGTTGAAA
ATGCTGTCTTTCTTCCACTTGATGGTTTTAGCTCCCTTGTCGAAGATTAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCATAATT
GCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCT
TTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTATCAGATGGCTTAAGATAT
TCAAATTCTGAATTGGTTGGTGATTGAAGGGTGACTATATGGGCAGGTTT
GGAGATCATTTGTCTTCACATCCTCTGAGGGATCTAGGGTTAGACTAGTA
AGAGTTTTGGTTTCTTTAAAATCCCAGTTGTTTTATATGAATATGTTTTT
GTTGTAATCCCAGGTATGGGATAAGAGGCTGCTTCACAGCAGGTGACTAT
GATTTGCCTTGTGCACTAGCAGGGGCGTGATTTTTGATAGCTGCAGATAG
TTTAATTCTGGTTTTTTTGACCACCCCCTCCCTGAGAGAGCCCTGAAAGG
GCCTGTGAAGGCTGCTGCTCCTCTTGAAGCAGCTTGTTGTTGCTGTTGCA
GTTCAACTACAAGAAGTCAGTGATATCCTGACAACAAAGATTGGACTTGC
CCCAAGGAACAAATGTCCGTAATCAGAAGGAAGTAGTCTAAAGAGATCTA
TGTCCCCTTTCTCCTCTAACCTTCTTTCTCTCCTAATGTTAGAGAGTTGG
AAGGGATTAGGGTTGAATGAGGGTTGGAAGGTAACCTCCTTCTCCCCTTT
TTTGTAGTTATCTATATTTGCTGTTTTTCGCTCGGGTGGTGACGTTGCTC
TGCCTCTGGCCTTTGACTTCTAATAACTTCTCTTTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_p04.g1 MSMg01no212_p04.g1 CHROMAT_FILE:
MSMg01no212_p04.g1 PHD_FILE: MSMg01no212_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:51 2005
         (284 letters)



>mm_chrX_133262223_133262906
          Length = 684

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttatcagatggcttaagatattcaaattctgaattggttggtgattgaagggtgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttatcagatggcttaagatattcaaattctgaattggttggtgattgaagggtgact 266

                                                                       
Query: 61  atatgggcaggtttggagatcatttgtcttcacatcctctgagggatctagggttagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatgggcaggtttggagatcatttgtcttcacatcctctgagggatctagggttagact 206

                                                                       
Query: 121 agtaagagttttggtttctttaaaatcccagttgttttatatgaatatgtttttgttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agtaagagttttggtttctttaaaatcccagttgttttatatgaatatgtttttgttgta 146

                                                                       
Query: 181 atcccaggtatgggataagaggctgcttcacagcaggtgactatgatttgccttgtgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 atcccaggtatgggataagaggctgcttcacagcaggtgactatgatttgccttgtgcac 86

                                                       
Query: 241 tagcaggggcgtgatttttgatagctgcagatagtttaattctg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  tagcaggggcgtgatttttgatagctgcagatagtttaattctg 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)