BAC Information

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BAC

Clone NameMSMg01-214F11
ChromosomeX (Build37)
Map Location 65,299,051 - 65,299,414
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666828, Gm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194
Downstream geneEG236844, LOC385372, LOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214F11.T7 (MSMg01no214_f11.b1)MSMg01-214F11.TJ (MSMg01no214_f11.g1)
ACCAG395025AG395026
length740738
length of high quality
(start - end)
361 (380 - 740)234 (125 - 358)
definitionCHROMAT_FILE: MSMg01no214_f11.b1 PHD_FILE: MSMg01no214_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:38 2005CHROMAT_FILE: MSMg01no214_f11.g1 PHD_FILE: MSMg01no214_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATCAGCCATAACAGAGACTAGTAGATACTGAGTGTTAGGTAGA
GATCAGAAGAATTATTGCTACGCAGTGGGTAGAGCCTCAAGTATAATCAG
AATCTCTCTTAACTTGTGTACATAGAAAGCCTAATCACAAAATTTGTTTT
CAAGCAACTTAAATTCCTACCTAACATAATCTTACTGAGTTCCAATGGAT
AATCCCAGTCCAGCATTCTCATAGTTGGCCTTGGTTTAACCAAAACTCAT
AAATCTGCGAAAGGGACTGAAAGTGACAGGGATATGTCTGGTGAGAAGGA
GGGGAGTTTATTAAAGGACCACCGCACAGAATAACTAGAATGAATTATAT
AGATGTAGGAAGTGTTCAGATTACAACACATTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTGTCACACACACACTTTTAAGAATATTTAAGAATT
TAGGTACTTTTTAATGTAAAAATGGCAATATCTAAAGTTAAAAAATTTCT
AGTCATAATAAAATGCAGGGAATTACGATCTCAGATGTGATAAACATGAT
GAATATAGAAAATAGAACAGCAGAATTATCTAGAAATTAGTATAAATAAA
ATAAGGATTAAAAGATGTTAAAGCTTGTGATTTTTAGAGATGAAAAAATA
AAAATCTTTGAAATAAAACCTCAAAAAATGAATTTAATAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTT
TTTAATGGAGTTACTTGTATTTCCTGGAGTCCACCTTCTTGAGTTCATTA
TATATATTGGATATTAGTCCCCTATGTGATTTAGGATAGGTAAAGATCCT
TTCCCAATCTGTTAGTTGCCTTTTTGTCTTATTGACAGTGTCTTTTGCTT
TAGAGAACTTTGCAATTTTATGAGGTCCCATTTGTCAGTTCTCCATCCTA
AAGCACAAGCCATTGCTGTTCTATTCAGGAATATTTTCCCTGTGCCCATA
TCTTCGACTTTTTCCCCCACCTTGCCCTCTATAAGTTTCACTGTCTCTGG
TTTTACGTGTAGTTCCTTGATCCACTTATATTTGACCTTAGTACAAGGAG
ATAGGAATCAATCAATTTGCATTCTTCTACATGTTAACCAACAGTTGTGC
CAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTGTAGC
TCCCTTGTCAAAGTTAAAGAGACCATAGGTGCGCAGGTTCATTTCTGGGT
CTTCAATTCTATTCCATTGGTCTACTTGTCTGTCGCTATACTAGTACCAT
GCAGGTTTTTTTTTTTTTTCTACCCTCTTTATTTTTTTTTATACACAATT
GGCTTGGAAAATAGTTTTTAGTCAGGGCTGGCTCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_f11.b1 MSMg01no214_f11.b1 CHROMAT_FILE:
MSMg01no214_f11.b1 PHD_FILE: MSMg01no214_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:38 2005
         (361 letters)



>mm_chrX_65298855_65299614
          Length = 760

 Score =  607 bits (314), Expect = e-178
 Identities = 351/366 (95%), Gaps = 7/366 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataactagaatgaattatatagatgtaggaagtgttcagattacaacacattctctctc 60
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 197 aataactagaatgaattatatagatgtaggaagtgttcagataactacacattctctctc 256

                                                                       
Query: 61  tctctctct-----ctctctctctctctctctgtcacacacacacttttaagaatattta 115
           ||| |||||     | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 257 tct-tctctcccccccctctctctctctttctgtcacacacacacttttaagaatattta 315

                                                                       
Query: 116 agaatttaggtactttttaatgtaaaaatggcaatatctaaagttaaaaaatttctagtc 175
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agaattcaggtactttttaatgtaaaaatggcaatatctaaagttaaaaaatttctagtc 375

                                                                       
Query: 176 ataataaaatgcagggaattacgatctcagatgtgataaacatgatgaatatagaaaata 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | 
Sbjct: 376 ataataaaatgcagggaattacgatctcagatgtgataaacatgatgaatatacaaatt- 434

                                                                       
Query: 236 gaacagcagaattatctagaaattagtataaataaaataaggattaaaagatgttaaagc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gaacagcagaattatctagaaattagtataaataaaataaggattaaaagatgttaaagc 494

                                                                       
Query: 296 ttgtgatttttagagatgaaaaaataaaaatctttgaaataaaacctcaaaaaatgaatt 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 495 ttgtgatttttagagatgaaaaaataaaaatctttgaaataaaacctcaaaatatgaatt 554

                 
Query: 356 taatac 361
           ||||||
Sbjct: 555 taatac 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 760
Length adjustment: 9
Effective length of query: 352
Effective length of database: 751
Effective search space:   264352
Effective search space used:   264352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)