BAC Information

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BAC

Clone NameMSMg01-215H18
ChromosomeX (Build37)
Map Location 118,682,139 - 118,682,254
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh11x, LOC245576, LOC385419, EG434907
Downstream geneEG245575, LOC100039544, Nap1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215H18.T7 (MSMg01no215_h18.b1)MSMg01-215H18.TJ (MSMg01no215_h18.g1)
ACCAG395717AG395718
length726735
length of high quality
(start - end)
577 (34 - 610)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no215_h18.b1 PHD_FILE: MSMg01no215_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:10 2005CHROMAT_FILE: MSMg01no215_h18.g1 PHD_FILE: MSMg01no215_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATCA
TTCTCACCTCATTTATCATGAAGTGGTATTGGATTTTGTCAAATGCTTTC
TCCGCATCTAATGACACTATCATGTGGTTTTTGTCTTTGAGTGTGTTTAT
ATAGTAGATTACATTAATGGATTTCCATACATTAAACTATCCTTGCATCA
CTGGGATAAAGCCCACTTGATCACAATGGATGATCATTTTGATGTGTTCT
TGATGTGGTTTTAGAGGATTTTTTTTTCCATTTTTTATTAGGTATTTAAC
TCATTTACATTTCCAATGCTATACCAAAAGTCACCCATATCCACCCACCC
CCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGT
ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAT
GGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCC
GGGGTACTGGTTAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGATCC
CTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGA
TCCATCCATTATCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGTTCCC
GGCATAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTCAATAAAATCT
TGCTAGTGTATGCAATGGTGTCAGCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATATTGGTTCCCTGAACTGTAGAGT
GAGGGCTATTATGGTTGGAAAGGCCAAATGGAAGCCTTTAGAGTTGCCTC
TGCCAAAGAAAATAGTGAATCAAAAACAGTATCGTATTCCTGGAGGAATT
GCAGAAATTACTGCCACTATCAAGGACTTGAAAGATGCAGGGGTGGTGGT
ATAATACTGCCTGAAAGTGAAATTAATATTTTTCAAATCATTACTGATTG
TAGTATTTTGCAAGTGACTGAAAAGATGTATTACAAATTATTCATCATAT
ACTTAAGGATTAATAAATAATTTAACACCATCCTCTAGTTACTAGTTGAG
TAAGTAAAACACCAAAACAAAAACACCTGGGTTTACTTCCATAATCAATT
TTCATTCTATTCCCAATACTTTCTGTGCACAGGATTCAAGGACAGTCATT
ATTTTAGCTGGTATTTATTACATTCTTTGTGAAGAAATATCTTGTTAATG
TGAGTTTGTCTTCTTCATCTATTTCATGAAGCATTATTTGTCATCTTAAT
TCCTCAATTAACAATATGTGTTTTCAAATTTGCATGTATTTTTACCATAC
ATTTAAGTAAAATCACATGAATACACTTCAGTTTTAAGACAAAGTTTAAT
CTCTTAGTTACTGTTTCCTATTTATTACAACTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_h18.g1 MSMg01no215_h18.g1 CHROMAT_FILE:
MSMg01no215_h18.g1 PHD_FILE: MSMg01no215_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:10 2005
         (289 letters)



>mm_chrX_118681762_118682450
          Length = 689

 Score =  224 bits (116), Expect = 4e-63
 Identities = 116/116 (100%)
 Strand = Plus / Minus

                                                                       
Query: 174 tggtataatactgcctgaaagtgaaattaatatttttcaaatcattactgattgtagtat 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tggtataatactgcctgaaagtgaaattaatatttttcaaatcattactgattgtagtat 434

                                                                   
Query: 234 tttgcaagtgactgaaaagatgtattacaaattattcatcatatacttaaggatta 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttgcaagtgactgaaaagatgtattacaaattattcatcatatacttaaggatta 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)