BAC Information

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BAC

Clone NameMSMg01-218F04
ChromosomeX (Build37)
Map Location 154,562,853 - 154,563,056
singlet/doubletsinglet
Overlap genenone
Upstream genePhex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34, Cnksr2
Downstream geneEG667483, LOC671033, LOC667487, LOC436243, LOC100040371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218F04.T7 (MSMg01no218_f04.b1)MSMg01-218F04.TJ (MSMg01no218_f04.g1)
ACCAG397534AG397535
length852705
length of high quality
(start - end)
213 (42 - 254)293 (84 - 376)
definitionCHROMAT_FILE: MSMg01no218_f04.b1 PHD_FILE: MSMg01no218_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:18 2005CHROMAT_FILE: MSMg01no218_f04.g1 PHD_FILE: MSMg01no218_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTTCATATCTTTATATAGATCCATACATTTATTATCTAGAGCTTTGGA
AAATATAAAGCCCATTAAAGGTTTTATCATGCAACATTCTCAAACAAGGT
ACACATATTTATTGAAATATTCCAATATTTTAATCTCTTTCCTTATTTGA
TTAAGTGCTAAATTGTTCACTATGCAAACTAAGNTACNNACAGGAAGGCA
CCTAAAATGGAACAAGGTTAAAAAAAACNNCCCAANCNNANATAAACACA
AATAATATTAATTAAATATTAATTTCCACTATCCTTACCTAATCCTTCAA
CATACTTCTATTTCCTTTCCCCTATATTCTTCTTCCAACCCTCAAAACTA
ATAATCCCACTATACCTTAACATTCTCTTTATTTACTTCTTGTACTATTA
TTCCCAATCATATCGCATCCGGTGGTACTCATCCCACCTTTCCACCCTGT
ATTTATTATACTACCAAGCCCCATTTATTATATGTGATTTTTTCCCTCCA
CATTTCCTACCTATTTAACTTCCAACTCATACACTTACTTCACATACGTT
ATTCTATCACCCTATCTCCTTCCTCCTCCCTCACTTTTACTCTATACACA
TCTTATAATATGGGAATAAATTCGGCAAGATATCCTGGAGTTTAACACTA
GCACATTACTCTTCAACTTATTTATCACAATTATACCCGTATCTATCTAC
TTATTTAATATAAAACCTTTTCGGAAATCCTCTTATCATTTTCATATAAC
CTCTACTTTTCCACCTTATTATCCACTGTTAACCACCCCAGTCCTCTCTC
AN
NNTTTTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACT
TTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAA
CGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTA
CATTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAA
CCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTT
AGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTG
GTCTGAAGTTCTCTATCTTTGTTGCACCTTTCTGCGGTTTAGGTATCAGA
GTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTAT
TTTGTGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCT
GATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGG
AGACTATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAG
ATGGCCAACTTGATCCTGATTCAACTTTGGTACCTGGCATCTGTCCAGAA
ATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATACTCTTTTG
TACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_f04.b1 MSMg01no218_f04.b1 CHROMAT_FILE:
MSMg01no218_f04.b1 PHD_FILE: MSMg01no218_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:18 2005
         (213 letters)



>mm_chrX_154562649_154563258
          Length = 610

 Score =  366 bits (189), Expect = e-106
 Identities = 202/207 (97%), Gaps = 3/207 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttcatatctttatatagatccatacatttattatctagagctttggaaaata 64
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 408 gaattcacttcacatctttatatagatacatacatttattatctagagctttggaaaata 349

                                                                       
Query: 65  taaagcccattaaaggttttatcatgcaacattctcaaacaaggtacacatatttattga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 taaagcccattaaaggttttatcatgcaacattctcaaacaaggtacacatatttattga 289

                                                                       
Query: 125 aatattccaatattttaatctctttccttatttgattaagtgctaaattgttcactatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aatattccaatattttaatctctttccttatttgattaagtgctaaattgttcactatgc 229

                                      
Query: 185 aaactaagntacnnacaggaaggcacc 211
           |||||||| |||  |||||||||||||
Sbjct: 228 aaactaag-tac--acaggaaggcacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 610
Length adjustment: 9
Effective length of query: 204
Effective length of database: 601
Effective search space:   122604
Effective search space used:   122604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)