BAC Information

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BAC

Clone NameMSMg01-218N16
ChromosomeX (Build37)
Map Location 153,312,350 - 153,312,658
singlet/doubletsinglet
Overlap genenone
Upstream gene4930503H13Rik, LOC640803
Downstream geneLOC434885, Phex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34, Cnksr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218N16.T7 (MSMg01no218_n16.b1)MSMg01-218N16.TJ (MSMg01no218_n16.g1)
ACCAG397867AG397868
length712737
length of high quality
(start - end)
313 (45 - 357)67 (449 - 515)
definitionCHROMAT_FILE: MSMg01no218_n16.b1 PHD_FILE: MSMg01no218_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:59 2005CHROMAT_FILE: MSMg01no218_n16.g1 PHD_FILE: MSMg01no218_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTCTCCTCTAAGCCTCAAGGACATAAATTTATAAAATTGCAAGC
TGACTTTTACCTTTAGCTCTTTAGGCTACCTCAGTAAGAAATGTGAACGG
GAACTATCATACACAATGGAATAATACTTTTTTTTCCCTCTGAGCAATTT
GAATTGAAGAGAATATACATTGTTCATGATTGGATTGCTATGCATTATGA
TTCAAAATATGTTTTCTATGAATTCACATAAATAATAATAACTTTCATGG
AATGATTGCTCCTCTGCAATATACTTTCATAGCCTAACTATGTTTTTTGG
CTTAACACTTTANCTCCCATGGNTAGCANAACCTCTGGNATGAAGAAGAC
CCCCAACAAATACTTGCGCAACAAAAAAAAATACAAGTAACCTTGGATTA
GATTTTTTCAAAGGACAAAAGATATCAGATAAAGTCAGGCAGTATTTCAC
TGGCACAAAGACTGAATAAAATCATGAAGGAATGCCTTGAAATTGGAGAA
CCTCCCAGTGTCTCCAGATGTCAAGCACACACACATGTACATGCATACAC
ACACACACACACACACACACACACACAATTAAAAGTATCTTTTATGTCTC
CCAGTAAGACACTTAATTATCCTTACCTACCTCACTTAAAAAGAAAACAT
TTTCTGTACTTC
ATGAAGTGCGTAGGCCTGGNGGACGCCTGGTTCGGAAGGNGAGGNGANAN
NANAGAAGTTTCCACGAGGGGGGGANNNGAGGAANANNGAAGGGNNGAGA
AGNANNGGAAAAATTTTTTCGANAAAAAGAGGGAGGAGGGAAAGGGAAAN
NAAAAAAAAAANCNGGAAANNCNANCNCANANNAGNNAGAAGGGNNAAGA
ANAAAAANNNAGGGGANAGNAGAAGGGGGNGAGGANGNGGAGAAAGTTTT
TATTCCTCNATTGTTGGTGGGATTGGAAGGTTGTANAANNACTCTGGAAA
TCAGNCGGGTGGTTTCTCATTTAANNGGACANAGNACNACCAGAGGANCC
CGCTTTTTTTTTTCTCCCCCCCCCCCCCCAAGANGNNCCAACTGGNAAGA
AGGACACATGCNCCCCCAAAACCNTAGCNAAAATATTGGGGGGGGGCGGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACACTTACACAACGGAGTACTACTCAGTTATCAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCGTGAGT
GAGGCAACCCAATCACAAAAGAACTCACACCATATGCACTTATTTTTTTT
TGTATATGAGCCCAGAAACTCACAATACCCCAGATATAAGATACCATTTG
CCCACCACATAAAACTCCTGAAGAATGATGACCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_n16.b1 MSMg01no218_n16.b1 CHROMAT_FILE:
MSMg01no218_n16.b1 PHD_FILE: MSMg01no218_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:59 2005
         (313 letters)



>mm_chrX_153312146_153312858
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttctcctctaagcctcaaggacataaatttataaaattgcaagctgactttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttctcctctaagcctcaaggacataaatttataaaattgcaagctgactttt 264

                                                                       
Query: 65  acctttagctctttaggctacctcagtaagaaatgtgaacgggaactatcatacacaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctttagctctttaggctacctcagtaagaaatgtgaacgggaactatcatacacaatg 324

                                                                       
Query: 125 gaataatacttttttttccctctgagcaatttgaattgaagagaatatacattgttcatg 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 gaataatacttttttttccctctgagcaatttgaaatgaagagaatatacattgttcatg 384

                                                                       
Query: 185 attggattgctatgcattatgattcaaaatatgttttctatgaattcacataaataataa 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attggattgctgtgcattatgattcaaaatatgttttctatgaattcacataaataataa 444

                                                                       
Query: 245 taactttcatggaatgattgctcctctgcaatatactttcatagcctaactatgtttttt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 taactttcatggaatgattgctcctctgcaatatactttcatagcctaactatgttttct 504

                    
Query: 305 ggcttaaca 313
           |||||||||
Sbjct: 505 ggcttaaca 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)