Query= MSMg01no218_o11.b1 MSMg01no218_o11.b1 CHROMAT_FILE:
MSMg01no218_o11.b1 PHD_FILE: MSMg01no218_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:03 2005
(316 letters)
>mm_chrX_148297716_148298431
Length = 716
Score = 580 bits (300), Expect = e-170
Identities = 309/312 (99%)
Strand = Plus / Plus
Query: 5 gaattcagcctgggcaatatagtgaggggacaacacaacagcattcaccccctacccctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcctgggcaatatagtgaggggacaacacaacagcattcaccccctacccctc 264
Query: 65 acccccttttcatgaattaatgtattctgtacttccattcaccactgtatcattctagta 124
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 acccccttttcatgaataaatgtattctgtacttccattcaccactgtatcattctagca 324
Query: 125 gtcttcatggagacatcccaagggtcagggtataggggactttggggatagcatttgaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcttcatggagacatcccaagggtcagggtataggggactttggggatagcatttgaaa 384
Query: 185 tgtaaatggaggaactatctaattttttaaaaatgccataagaaagtatttcttcttttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtaaatggaggaactatctaattttttaaaaatgccataagaaagtatttcttcttttc 444
Query: 245 tactcctttgtctataatagagtagctcagaccttgatagtggcgtttgctaaactgatc 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 tactcctttgtctataatagagtagctcagaccttgacagtggcgtttgctaaactgatc 504
Query: 305 tctttcctcctc 316
||||||||||||
Sbjct: 505 tctttcctcctc 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no218_o11.g1 MSMg01no218_o11.g1 CHROMAT_FILE:
MSMg01no218_o11.g1 PHD_FILE: MSMg01no218_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:03 2005
(287 letters)
>mm_chrX_148450020_148450706
Length = 687
Score = 474 bits (245), Expect = e-138
Identities = 271/287 (94%), Gaps = 13/287 (4%)
Strand = Plus / Minus
Query: 1 tgtactgagaaaggtatcttgtgtgaacactaggagtccaggtccttaacccagtgctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 317 tgtactgagaaaggtatcttgtgtgaacactaggagtccaggtccttaagccagtgctcc 258
Query: 61 agctctgtccttttccctccctgttaaatcaagtttcccccatttccaccacttcccctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agctctgtccttttccctccctgttaaatcaagtttcccccatttccaccacttcccctc 198
Query: 121 tgtctctttccctccccctttctctcctctctccctccctttctctttctctctcctctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgtctctttccctccccctttctctcctctctccctccctttctctttctctctcctctc 138
Query: 181 tccctccctctccccctcccctcccctcccctctctctcctctccttccctctccctctc 240
||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 137 tcccttcctctccccctcccctc----------tctctcctctccttccctctccctctc 88
Query: 241 tcctcctccctccctctctcgctccaactctgtctttttccctccat 287
|||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 87 tcctcc---ctccctctctcgctccaactctgtccttttccctccat 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
