CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGTCTCCTGGCTCTGCCCCCAAAACATTCTGTGAACATCTCTGT
TTCTGATACTCCCATTCTTTCCTCACATTGAGGAATCCCCCATCCTCCCT
GATTCTACTCAGCTTGTGAGTGTAACTGTCACCTTTAGGGAACCTGAGAG
GATCCTTTCCCTGAGGCTATTCCAGCATATCTGGGAAATCAGAGGTACCT
GTGAGACCAGACTTGGCTCTGGTGGATGTTCTGAGAGCTGGTGGGTTGGT
GTTGGGCTGGGAGGATGAGAAAGCCTGGGCTCCCCACAGCCCCATAACCA
GTAAGGCACAGATGGGGAAATCCCCATGCTGGGAGCCTCAGCGCTATTCA
CCTGGGGAGAGGGTCTGATAGGCTACCCATCAGGACTACTGGCACATGTC
CGAATATGTCAAGGTCCTGGAACAGAACTCCATGGTGAGGGGAAACCAGA
GCAAAAAGAGGGGGCTTGTATACCCGGGCCGTGTGGGCAACCCCCTTACC
ACCCCAGTGANNNNGGGAAGTAAGAGGATTCATCAACCACTGTCAAAAAG
TCCAGATCGGATAAGGAACCCGTTCAAAAAAAAAAAAAGGGCTGTTTTAA
AAAGTCCACCCCTCCCCCGGGGTCTCTCCCTCTTCAACCAAGCATTTTTT
TTTCCCCTTCACCATATTTTAAATGGGCCCTCCCCGGGTGATTTTTGCGG
CGCTATTATATTGTGGGGG

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACAAAATCATGGTATGTGAAAA
TGATTTGTTTCTTTTTGTGTTTTGTACCGTTTCTTTTCTTTTATATTTTC
TTGTTATATAATTTCTGGGTAGGTGACATGTTTCTTGACTCAAACTTCTA
GTACTATGTATAAAGTGTATACAAATAAGAACAGTTGATTTTTTTTTTTA
TTCTAAATGATTTGGGAAAAAACTTAGTCTTTTCCAATTAAGTGTACAGT
CATAAAGTTATTCTTTATTGAGAGGAAAGTACCACTCAGTAACCCTATTA
TTCTTTTGTTTGTTAGTATGTTTTGTTTCTAAATTCTATTTTATTAGATA
TTTTCTTTATTTACATTTTAAATGTTATCCCCTTTCCTGATTTAACCACC
TAAAACCCCTATCCCAACCCCACTCCCCCTGCTCATCAAGCTACATACTC
CCACATCCTGGTCCTGGCATTTCCTTACACTGGGGCATCGAGCCTTCATG
GACCAAGGGCCTCTCCTCCCACTGATGACCAACAAGGCCATCCTATGCTA
CAAATGCAGCTGGAGCCATGAGTCCCTCCATGTGTACTGTTTGGTTTGTG
GTTTAGTCGCTGTGGGCTCTGGAGATACTGGTTGGGTCATATTGTTATTC
CTTCTATGGAGCTATAAACCTCTTTN

Query= MSMg01no231_d02.g1 MSMg01no231_d02.g1 CHROMAT_FILE:
MSMg01no231_d02.g1 PHD_FILE: MSMg01no231_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:25 2005
         (590 letters)



>mm_chrX_65006957_65007947
          Length = 991

 Score =  944 bits (488), Expect = 0.0
 Identities = 503/508 (99%), Gaps = 1/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacaaaatcatggtatgtgaaaatgatttgtttctttttgtgttttgtaccgtttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 508 ccacaaaatcatggtatgtgaaaatgatttgtttctttttgtgttttgtatagtttcttt 449

                                                                       
Query: 61  tcttttatattttcttgttatataatttctgggtaggtgacatgtttcttgactcaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcttttatattttcttgttatataatttctgggtaggtgacatgtttcttgactcaaact 389

                                                                       
Query: 121 tctagtactatgtataaagtgtatacaaataagaacagttga-tttttttttttattcta 179
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 388 tctagtactatgtataaagtgtatacaaataagaacagttgattttttttttttattcta 329

                                                                       
Query: 180 aatgatttgggaaaaaacttagtcttttccaattaagtgtacagtcataaagttattctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatgatttgggaaaaaacttagtcttttccaattaagtgtacagtcataaagttattctt 269

                                                                       
Query: 240 tattgagaggaaagtaccactcagtaaccctattattcttttgtttgttagtatgttttg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tattgagaggaaagtaccactcagtaaccctattattcttttgtttgttagtatgttttg 209

                                                                       
Query: 300 tttctaaattctattttattagatattttctttatttacattttaaatgttatccccttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tttctaaattctattttattagatattttctttatttacattttaaatgttatccccttt 149

                                                                       
Query: 360 cctgatttaaccacctaaaacccctatcccaaccccactccccctgctcatcaagctaca 419
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cctgatttcaccaccgaaaacccctatcccaaccccactccccctgctcatcaagctaca 89

                                                                       
Query: 420 tactcccacatcctggtcctggcatttccttacactggggcatcgagccttcatggacca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  tactcccacatcctggtcctggcatttccttacactggggcatcgagccttcatggacca 29

                                       
Query: 480 agggcctctcctcccactgatgaccaac 507
           ||||||||||||||||||||||||||||
Sbjct: 28  agggcctctcctcccactgatgaccaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space:   568980
Effective search space used:   568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)