BAC Information

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BAC

Clone NameMSMg01-231I12
ChromosomeX (Build37)
Map Location 48,765,353 - 48,765,646
singlet/doubletsinglet
Overlap geneHs6st2
Upstream geneOlfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356
Downstream geneUsp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231I12.T7 (MSMg01no231_i12.b1)MSMg01-231I12.TJ (MSMg01no231_i12.g1)
ACCAG398319AG398320
length749751
length of high quality
(start - end)
320 (45 - 364)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no231_i12.b1 PHD_FILE: MSMg01no231_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:51 2005CHROMAT_FILE: MSMg01no231_i12.g1 PHD_FILE: MSMg01no231_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCCCTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAATTTTCTTTGTCTCCGCCCCCACGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCC
TGTAGTATAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTA
TCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGTTATACTTGTTTTTGCAACAA
GAGAAAGCAAAAGAATAAGCAGCCCATTCCAGGGTGTACCGCAGACACTC
CACTGTGCTGATTACAAATACATTGCAGACATGTCTTACTTTAATCCCTA
TAATAATAAGACTCTACTTTGTATTGGGGCAGAGTCTGCAGAAAACAAAA
GAAGTACACCTTCATCATGTGTTTCAGACTCTCTATACCACCTCCCTTAC
TCTTGTCTACCTTCAACCATACCAGCATGTACCACGTATACCGTCTGGGT
GCACAGTAAAAATTTGCTGACTGAATTACTTCAAATGTAATAACACATAT
AGTGCCTGATTAACTGTTACATGGATATTATTGAGAGATTGGGAGACAGT
CTCAAGAGTGTACCAGGAGAGACATGATAGAGGAAGGCATAGCCACCATT
TTAAAATGTGAGTGTAAGTCATTCCAGTGACTCCACAAGACTCTCCAGTA
GTAGACAATAAGTAGACAATCATGTAGTAAACATTTCAAAGACCCAAGTG
GAGGGTCTTTGAAATGATACATGCATACCATTATACAATGTATATGTATA
TCAAATATTGACTCATAGCATCCAAAGTATACAAATATACAATCTATATA
ATTTTATGTGTCAATTAATTTGATAAAACAATCTCTGCTAGACAGGGTGG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_i12.g1 MSMg01no231_i12.g1 CHROMAT_FILE:
MSMg01no231_i12.g1 PHD_FILE: MSMg01no231_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:51 2005
         (294 letters)



>mm_chrX_48765153_48765846
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggttatacttgtttttgcaacaagagaaagcaaaagaataagcagcccattccaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggttatacttgtttttgcaacaagagaaagcaaaagaataagcagcccattccaggg 260

                                                                       
Query: 61  tgtaccgcagacactccactgtgctgattacaaatacattgcagacatgtcttactttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaccgcagacactccactgtgctgattacaaatacattgcagacatgtcttactttaa 320

                                                                       
Query: 121 tccctataataataagactctactttgtattggggcagagtctgcagaaaacaaaagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tccctataataataagactctactttgtattggggcagagtctgcagaaaaaaaaagaag 380

                                                                       
Query: 181 tacaccttcatcatgtgtttcagactctctataccacctcccttactcttgtctaccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaccttcatcatgtgtttcagactctctataccacctcccttactcttgtctaccttc 440

                                                                 
Query: 241 aaccataccagcatgtaccacgtataccgtctgggtgcacagtaaaaatttgct 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccataccagcatgtaccacgtataccgtctgggtgcacagtaaaaatttgct 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)